PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G01618
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HB-other
Protein Properties Length: 268aa    MW: 29671 Da    PI: 9.7262
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G01618genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-07203249753
                  --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  ++k  l++Le+++++++ p+ +    + + ++L+ +++  WF  +R 
  Ro02_G01618 203 LKKVHLDTLERVYRRTKRPTNAIVSSIVHVTNLPRKRIVKWFEDKRS 249
                  5677899*************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MAFASALNTP KGLQCLPSSR NQLSLAARPL PANLVLPRHF PARFSSAVAF ARRKNHRSAV  60
TSSQPKTKKK ISAENEEDEV DGDAIDALFS LLEEDLKNDG IKNLAAELCL DRALVLQMLR  120
DPPPNLLMLS AALPDEPAPK KSVPEETTVE ITLETVAETT VETVVETTVE TVVETTTDAA  180
EVKTAVKVPI HARQQKFAAQ KRLKKVHLDT LERVYRRTKR PTNAIVSSIV HVTNLPRKRI  240
VKWFEDKRSE EGVPDSRLPY QRSAPSTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.13e-49HB-other family protein