PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ro02_G01596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25688.5 Da PI: 5.6946 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.8e-17 | 5 | 54 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 ++++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a ++ Ro02_G01596 5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQASILMN 54 59*****999.**********8.....334********************976665 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence |
MVQSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAS ILMNGQNAKT 60 NFPNSFSNNN PSDDQETKPT DPHHQQTPWN PKELAELLSS KLKKCCKDPS PSLTCLRLDN 120 DNSHIGVWQK RPAGSRASSN WVMRIELGKK KKQCNTTDIE SEEAISTSLS SLISSSTAGS 180 IDNEAGIVSE EADDDHEEED KLAMQMIEEL LNWNSYPIPS STSNVQEGN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25390.2 | 7e-55 | ERF family protein |