PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G01504

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 2048aa MW: 226649 Da PI: 8.8259

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G01504	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.2e-06	1922	1943	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tGtC+ G +Ck +H++ Ro02_G01504 1922 CPTFEETGTCPQGLKCKLHHPR 1943 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2048 aa Download sequence
MDLPQYLHHH PRYAPSHPPS SDPNFPNYPH RNHHNNYHHH HTPPPPSPQP PQLRPPPPPQ 60 SPSSYKALPP PPPPPHPQRT FSPHPIDSDH SRTFSPRANH RATLDAAERP RHRLSQFVDH 120 HYRESGPDSW DRSRNYSPRD YDRELLKPQY RRDSQSDGGS ARFRSEYERD RRAEDNFRHR 180 SNNHDTSYRE MEFQNSNSSS GCYDESAYEE LLKSGRRYEA YEIQRWGLER PQAEEDLYDP 240 FELDERDEDE DEDRIVSDKR DYYGSDSARI SSSRWKQIQK KSALLRLQTP KLRDRNYSAY 300 FDNSGSGGSF RGKEQYEYSV HGRDEQEGEE RRGGEERGQE QRGGSPLDLD VSFKSNSLVA 360 KTVRNRDERR GSVSDRDCSD SPPTKLTEDV VNLDTSALVS NKTSSPDKDA LKLKGEVTTS 420 GMNSQPCSVV TDDAFVKSEV ERESKGKSLH KDGKNLSSRP MSSLKVSKKT KVVKKTVAKK 480 TVKKVTNPTS QPKSKIDEPG TSFIHSPFAG TGKGEASSIS DPCPNDLCVL PVNKKVDVSD 540 EYGSVLNSCS KNIGNNSTAN LGSSSAEEIN ADQRRHLNVD TPVQGLLSVS NFNSNVTDSI 600 RVAACPEICG VVDVSKPICQ SEDILSPDKV LQKESSQSML AVEGNLSSGF LNLDKMHESM 660 NVMGSDHGAE TTLDIDSGIK MSHQEIMVHD VGTVDAISEQ PCRYQLPTSL QNGGFVEELP 720 KAISSAESNM AVGLSSSGET KAVRSKIGRR TRWDSDEVYV RKDKNITVSN GGNANSFGKQ 780 PSPDCAARSF EICATERSPN VPESVGDTKS ATPMIQKKRK VKTQLDFSRI SDTCVEPVNV 840 SVRKNALDAT VSSFLKDPSH VEVSVHGVQK LDIRSQPGND GVSVLNGKSS VNGFCETKIS 900 ARIDVNYDTN EISPKRRKVT GSHLVLTTAQ TNRGPADKST SYTHESLTGN DVPTDQADKG 960 TSSSIGSQCA TSNLIPSHEE INVYLEEIMA GVSSDTVGAA RDAFTNDDMK FEHQGIDSSS 1020 VSEGSGTPQT QFLCPSESRN EENEDSIEVM GVNNNHLDIM DIDGSHEEHF DVSATNEQVM 1080 IHGETAPCTI HSELQPADLG DNSFCTNMES DYLYVKPFVS NCLLSFANGS ELTTTNSNDE 1140 GMKSVPDKLS DTGTPGTPET STSITDMHML TCNPSVIKSF DEKVCGDDQK FDVKSVVASA 1200 GNLISETKTN LTLDHVTEGD QSVTGKTVPL KLQNSKKTSH GLHLISAESA LKSQLGQATR 1260 KIVPGRPYSS FTTSQKTTSS THISKPRTWH RNANSSASPL PASMPFSSTL PPQRQLPQRN 1320 GKIESNSYVR KGNCLVRRRA PVAAVPQSSQ GLSSSVYQSN FSGVDGLKKN AGSDSRVDIK 1380 NPPNLMRTGG MNAPSDRPTA PLPNGAKKST AAAISSGIPT LSPLAEPLLS GFLETSSDPM 1440 NSLETKDAEG SVKDLLATSV TQENHCGPVN NLHDGNLASS HAKKIIYVKR NLNQLVASSN 1500 PSDLSVHNAD KNQPSDGYYK RRKHQLIRSS LESNGKQTVL LPTDNLNSGI QRARKVIPSR 1560 IFNKKRSLKA VARTSKKNSL VWTPSGTQSS NNNGSSFDHQ KVKPHLFPWK RARYWRTVMQ 1620 SQASNFNYSS SSTISKKLLL SRMRDTVYTR STHGFSLRKY RVLSVGGSSL KWSKSIESRS 1680 KKVNEEATRA VAEVEKKKRE HNGAACTSSG SKIRNNSPGK RIFRIGSVRY KMDPSRRTLK 1740 RISDDESSSS AVRNPEKDAK RSYVPRRLVI GNDEYVRIGN GNQLIRDPKK RTRILASERV 1800 RWSLHTARQR LAKKRKYCQF FTRFGKCNKD DGKCPYIHDP SKIAVCTKFL NGLCSNPNCK 1860 LTHKVIPERM PDCSFFLQGL CTNKNCSYRH VNVNPKASTC EGFLKGYCAD GNECRKKHSY 1920 VCPTFEETGT CPQGLKCKLH HPRKRTKGKI KKRSREHKNG WGRYFVLKDV SVSEPISASG 1980 KHYAQNGDAI FGNDFISIDV SDEEDGESNN PPEQTTFYDS DPSELDLDDL DELIKPVRLL 2040 DKMKTNTF

Sequence ? help Back to Top

Protein Sequence Length: 2048 aa Download sequence

MDLPQYLHHH PRYAPSHPPS SDPNFPNYPH RNHHNNYHHH HTPPPPSPQP PQLRPPPPPQ  60
SPSSYKALPP PPPPPHPQRT FSPHPIDSDH SRTFSPRANH RATLDAAERP RHRLSQFVDH  120
HYRESGPDSW DRSRNYSPRD YDRELLKPQY RRDSQSDGGS ARFRSEYERD RRAEDNFRHR  180
SNNHDTSYRE MEFQNSNSSS GCYDESAYEE LLKSGRRYEA YEIQRWGLER PQAEEDLYDP  240
FELDERDEDE DEDRIVSDKR DYYGSDSARI SSSRWKQIQK KSALLRLQTP KLRDRNYSAY  300
FDNSGSGGSF RGKEQYEYSV HGRDEQEGEE RRGGEERGQE QRGGSPLDLD VSFKSNSLVA  360
KTVRNRDERR GSVSDRDCSD SPPTKLTEDV VNLDTSALVS NKTSSPDKDA LKLKGEVTTS  420
GMNSQPCSVV TDDAFVKSEV ERESKGKSLH KDGKNLSSRP MSSLKVSKKT KVVKKTVAKK  480
TVKKVTNPTS QPKSKIDEPG TSFIHSPFAG TGKGEASSIS DPCPNDLCVL PVNKKVDVSD  540
EYGSVLNSCS KNIGNNSTAN LGSSSAEEIN ADQRRHLNVD TPVQGLLSVS NFNSNVTDSI  600
RVAACPEICG VVDVSKPICQ SEDILSPDKV LQKESSQSML AVEGNLSSGF LNLDKMHESM  660
NVMGSDHGAE TTLDIDSGIK MSHQEIMVHD VGTVDAISEQ PCRYQLPTSL QNGGFVEELP  720
KAISSAESNM AVGLSSSGET KAVRSKIGRR TRWDSDEVYV RKDKNITVSN GGNANSFGKQ  780
PSPDCAARSF EICATERSPN VPESVGDTKS ATPMIQKKRK VKTQLDFSRI SDTCVEPVNV  840
SVRKNALDAT VSSFLKDPSH VEVSVHGVQK LDIRSQPGND GVSVLNGKSS VNGFCETKIS  900
ARIDVNYDTN EISPKRRKVT GSHLVLTTAQ TNRGPADKST SYTHESLTGN DVPTDQADKG  960
TSSSIGSQCA TSNLIPSHEE INVYLEEIMA GVSSDTVGAA RDAFTNDDMK FEHQGIDSSS  1020
VSEGSGTPQT QFLCPSESRN EENEDSIEVM GVNNNHLDIM DIDGSHEEHF DVSATNEQVM  1080
IHGETAPCTI HSELQPADLG DNSFCTNMES DYLYVKPFVS NCLLSFANGS ELTTTNSNDE  1140
GMKSVPDKLS DTGTPGTPET STSITDMHML TCNPSVIKSF DEKVCGDDQK FDVKSVVASA  1200
GNLISETKTN LTLDHVTEGD QSVTGKTVPL KLQNSKKTSH GLHLISAESA LKSQLGQATR  1260
KIVPGRPYSS FTTSQKTTSS THISKPRTWH RNANSSASPL PASMPFSSTL PPQRQLPQRN  1320
GKIESNSYVR KGNCLVRRRA PVAAVPQSSQ GLSSSVYQSN FSGVDGLKKN AGSDSRVDIK  1380
NPPNLMRTGG MNAPSDRPTA PLPNGAKKST AAAISSGIPT LSPLAEPLLS GFLETSSDPM  1440
NSLETKDAEG SVKDLLATSV TQENHCGPVN NLHDGNLASS HAKKIIYVKR NLNQLVASSN  1500
PSDLSVHNAD KNQPSDGYYK RRKHQLIRSS LESNGKQTVL LPTDNLNSGI QRARKVIPSR  1560
IFNKKRSLKA VARTSKKNSL VWTPSGTQSS NNNGSSFDHQ KVKPHLFPWK RARYWRTVMQ  1620
SQASNFNYSS SSTISKKLLL SRMRDTVYTR STHGFSLRKY RVLSVGGSSL KWSKSIESRS  1680
KKVNEEATRA VAEVEKKKRE HNGAACTSSG SKIRNNSPGK RIFRIGSVRY KMDPSRRTLK  1740
RISDDESSSS AVRNPEKDAK RSYVPRRLVI GNDEYVRIGN GNQLIRDPKK RTRILASERV  1800
RWSLHTARQR LAKKRKYCQF FTRFGKCNKD DGKCPYIHDP SKIAVCTKFL NGLCSNPNCK  1860
LTHKVIPERM PDCSFFLQGL CTNKNCSYRH VNVNPKASTC EGFLKGYCAD GNECRKKHSY  1920
VCPTFEETGT CPQGLKCKLH HPRKRTKGKI KKRSREHKNG WGRYFVLKDV SVSEPISASG  1980
KHYAQNGDAI FGNDFISIDV SDEEDGESNN PPEQTTFYDS DPSELDLDDL DELIKPVRLL  2040
DKMKTNTF