PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G01504
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 2048aa    MW: 226649 Da    PI: 8.8259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G01504genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.2e-0619221943627
                   -SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                   C++f +tGtC+ G +Ck +H++
  Ro02_G01504 1922 CPTFEETGTCPQGLKCKLHHPR 1943
                   *****************99985 PP

Sequence ? help Back to Top
Protein Sequence    Length: 2048 aa     Download sequence    
MDLPQYLHHH PRYAPSHPPS SDPNFPNYPH RNHHNNYHHH HTPPPPSPQP PQLRPPPPPQ  60
SPSSYKALPP PPPPPHPQRT FSPHPIDSDH SRTFSPRANH RATLDAAERP RHRLSQFVDH  120
HYRESGPDSW DRSRNYSPRD YDRELLKPQY RRDSQSDGGS ARFRSEYERD RRAEDNFRHR  180
SNNHDTSYRE MEFQNSNSSS GCYDESAYEE LLKSGRRYEA YEIQRWGLER PQAEEDLYDP  240
FELDERDEDE DEDRIVSDKR DYYGSDSARI SSSRWKQIQK KSALLRLQTP KLRDRNYSAY  300
FDNSGSGGSF RGKEQYEYSV HGRDEQEGEE RRGGEERGQE QRGGSPLDLD VSFKSNSLVA  360
KTVRNRDERR GSVSDRDCSD SPPTKLTEDV VNLDTSALVS NKTSSPDKDA LKLKGEVTTS  420
GMNSQPCSVV TDDAFVKSEV ERESKGKSLH KDGKNLSSRP MSSLKVSKKT KVVKKTVAKK  480
TVKKVTNPTS QPKSKIDEPG TSFIHSPFAG TGKGEASSIS DPCPNDLCVL PVNKKVDVSD  540
EYGSVLNSCS KNIGNNSTAN LGSSSAEEIN ADQRRHLNVD TPVQGLLSVS NFNSNVTDSI  600
RVAACPEICG VVDVSKPICQ SEDILSPDKV LQKESSQSML AVEGNLSSGF LNLDKMHESM  660
NVMGSDHGAE TTLDIDSGIK MSHQEIMVHD VGTVDAISEQ PCRYQLPTSL QNGGFVEELP  720
KAISSAESNM AVGLSSSGET KAVRSKIGRR TRWDSDEVYV RKDKNITVSN GGNANSFGKQ  780
PSPDCAARSF EICATERSPN VPESVGDTKS ATPMIQKKRK VKTQLDFSRI SDTCVEPVNV  840
SVRKNALDAT VSSFLKDPSH VEVSVHGVQK LDIRSQPGND GVSVLNGKSS VNGFCETKIS  900
ARIDVNYDTN EISPKRRKVT GSHLVLTTAQ TNRGPADKST SYTHESLTGN DVPTDQADKG  960
TSSSIGSQCA TSNLIPSHEE INVYLEEIMA GVSSDTVGAA RDAFTNDDMK FEHQGIDSSS  1020
VSEGSGTPQT QFLCPSESRN EENEDSIEVM GVNNNHLDIM DIDGSHEEHF DVSATNEQVM  1080
IHGETAPCTI HSELQPADLG DNSFCTNMES DYLYVKPFVS NCLLSFANGS ELTTTNSNDE  1140
GMKSVPDKLS DTGTPGTPET STSITDMHML TCNPSVIKSF DEKVCGDDQK FDVKSVVASA  1200
GNLISETKTN LTLDHVTEGD QSVTGKTVPL KLQNSKKTSH GLHLISAESA LKSQLGQATR  1260
KIVPGRPYSS FTTSQKTTSS THISKPRTWH RNANSSASPL PASMPFSSTL PPQRQLPQRN  1320
GKIESNSYVR KGNCLVRRRA PVAAVPQSSQ GLSSSVYQSN FSGVDGLKKN AGSDSRVDIK  1380
NPPNLMRTGG MNAPSDRPTA PLPNGAKKST AAAISSGIPT LSPLAEPLLS GFLETSSDPM  1440
NSLETKDAEG SVKDLLATSV TQENHCGPVN NLHDGNLASS HAKKIIYVKR NLNQLVASSN  1500
PSDLSVHNAD KNQPSDGYYK RRKHQLIRSS LESNGKQTVL LPTDNLNSGI QRARKVIPSR  1560
IFNKKRSLKA VARTSKKNSL VWTPSGTQSS NNNGSSFDHQ KVKPHLFPWK RARYWRTVMQ  1620
SQASNFNYSS SSTISKKLLL SRMRDTVYTR STHGFSLRKY RVLSVGGSSL KWSKSIESRS  1680
KKVNEEATRA VAEVEKKKRE HNGAACTSSG SKIRNNSPGK RIFRIGSVRY KMDPSRRTLK  1740
RISDDESSSS AVRNPEKDAK RSYVPRRLVI GNDEYVRIGN GNQLIRDPKK RTRILASERV  1800
RWSLHTARQR LAKKRKYCQF FTRFGKCNKD DGKCPYIHDP SKIAVCTKFL NGLCSNPNCK  1860
LTHKVIPERM PDCSFFLQGL CTNKNCSYRH VNVNPKASTC EGFLKGYCAD GNECRKKHSY  1920
VCPTFEETGT CPQGLKCKLH HPRKRTKGKI KKRSREHKNG WGRYFVLKDV SVSEPISASG  1980
KHYAQNGDAI FGNDFISIDV SDEEDGESNN PPEQTTFYDS DPSELDLDDL DELIKPVRLL  2040
DKMKTNTF