PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G01473

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 288aa MW: 32962.2 Da PI: 7.864

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G01473	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.7	9.2e-53	7	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv++yL++k++++++++ +i+e+d+yk++Pw+Lp + +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + + Ro02_G01473 7 LPPGFRFHPTDEELVKHYLCRKCQSQTISV-PIIAEIDLYKYDPWELPGLALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGH--PK 101 79**************************.88***********6555679*********************************99..78 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+ap+gekt+W+mheyrl Ro02_G01473 102 PVGIKKALVFYAGKAPRGEKTNWIMHEYRL 131 9*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MSSELQLPPG FRFHPTDEEL VKHYLCRKCQ SQTISVPIIA EIDLYKYDPW ELPGLALYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGHP KPVGIKKALV FYAGKAPRGE 120 KTNWIMHEYR LADVDRSPRK KNSLRLDDWV LCRIYNKKGT AEKQQQPPTS RKMISGSEFE 180 DVKPENLMAC SVPPASVGAT RPNDYVYFDN SDSVPRLHTD SSCSEQVVSP EFTSEVQSEP 240 KWKEWDKAFD FTYNYGDATV EPGFGSQFQG GNQMSPLQDM FMYLPRPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-153	NAC family protein