PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G01401

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 431aa MW: 47418.5 Da PI: 9.653

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G01401	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00032	200	222	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg F +nL+ H+ + H Ro02_G01401 200 SCPECGAIFMKAENLELHQAVrH 222 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MSATMANLKS QRKPTKQTHQ KIKKQNQNQN HQKPEIKPPY WTVVRGLLTC KHLHAVQLLQ 60 QEGKQQPQKQ QNEQLAAMEE MSAAKKCKKM RCSGSLCSNT KITHRPELGS PEVHKKRASS 120 MGSSSITNET SSRSMKAPLH ELNGVVSTSS SSLSSNISSA GGSFRAMPFR RFSGCYECRM 180 VVDPVLGFAR DPSLRGSICS CPECGAIFMK AENLELHQAV RHAVSELGPE DTSKNIVEII 240 FQSSWLKKQA PICKIDRILK VHNTQKTISK FEEYRDAIKA KATPNKKHPR CIADGNELLR 300 FHCTTLDCSL GLNGSSNLCN SIPNCNVCSI IKNGFRVVDR SELIGNNGIL TTATSGRAHD 360 MVSEDGGGEK RRAMLVCRVI AGRVKKNMEG GGTEEYDSVA GAVGVYSNLD ELYVFNPKAI 420 LPCFVVIYGG F

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MSATMANLKS QRKPTKQTHQ KIKKQNQNQN HQKPEIKPPY WTVVRGLLTC KHLHAVQLLQ  60
QEGKQQPQKQ QNEQLAAMEE MSAAKKCKKM RCSGSLCSNT KITHRPELGS PEVHKKRASS  120
MGSSSITNET SSRSMKAPLH ELNGVVSTSS SSLSSNISSA GGSFRAMPFR RFSGCYECRM  180
VVDPVLGFAR DPSLRGSICS CPECGAIFMK AENLELHQAV RHAVSELGPE DTSKNIVEII  240
FQSSWLKKQA PICKIDRILK VHNTQKTISK FEEYRDAIKA KATPNKKHPR CIADGNELLR  300
FHCTTLDCSL GLNGSSNLCN SIPNCNVCSI IKNGFRVVDR SELIGNNGIL TTATSGRAHD  360
MVSEDGGGEK RRAMLVCRVI AGRVKKNMEG GGTEEYDSVA GAVGVYSNLD ELYVFNPKAI  420
LPCFVVIYGG F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-103	C2H2 family protein