PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G00778
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 337aa    MW: 36622.6 Da    PI: 9.9485
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G00778genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31264322259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp ++++tYegeH+h 
  Ro02_G00778 264 ADEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAPDDPAMLIVTYEGEHRHA 322
                  69************************9888****************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MAVEMMSFPK IEDQKAIQEA ASQGLKSMEQ LIRYLSHQQH ANQLSSRMDC TDLTDHTVSK  60
FKKVISLLNR TGHARFRRGP VAVPVQFPSS QPSTSSSASL PFPPSQTLSL VPAPVASPAL  120
IKAQETSFLQ SQPHSMTLDF TRPNILTSNP KCTDIEFSVS SSSSFMSSAI TGDNSVSNGK  180
LGPSLFLAQN PAPAVSGAKP PLSTAPYKKR CHEHDHSDDV SCKLSVSGSA SGSGKCHCSK  240
RRKNRVKKTI RVPAISSKIA DIPADEYSWR KYGQKPIKGS PYPRGYYKCS TVRGCPARKH  300
VERAPDDPAM LIVTYEGEHR HAPENLNGGV GLVFEST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-117WRKY family protein