PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G00764

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 513aa MW: 58783.3 Da PI: 6.869

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G00764	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.6	2.5e-11	30	106	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt+ l L++ + +e + +++ + ++W+ +++++ + g+ rs q + kwe l +yk i++++++ s s + Ro02_G00764 30 WTETDLLILVNEISAVEADCQKEFSSFQKWKIIAQNCTALGVPRSLDQYRRKWEALLHDYKIIRHWNSQS-RASASYW 106 ********************************************************************95.4444455 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MKGEQTVSEF QQSNRGSGSR QTRSQVAPDW TETDLLILVN EISAVEADCQ KEFSSFQKWK 60 IIAQNCTALG VPRSLDQYRR KWEALLHDYK IIRHWNSQSR ASASYWVLES ERRKQFGLPR 120 NFDRELFKAI GDYEKVRENQ SDTEPDSEPE AEVEADMPEE DEVVEPESKR RRRRSTKQKS 180 SPVKNPARSC MVKKPVQKPR QTHAEEKPVR KPRQMHVQEK TVVKPVQTHV AEKPLEKPRQ 240 THLEGKPVER PGQTQAEEKP VERPRQTHAK EKPVEKPSQT HAEEKPVEIL VEGKPAEKPP 300 QTDAEENAVG KTCQTHVEGK PGQTHAEEKH VESCLEEIPM ENLAEEKPLQ THAEEKPLQT 360 HAEEKPMGSC LEALPTKNLA EEMPHKSCLK KKYKASEEQP VGSCLEEVIP MNSVVEKKPQ 420 KSRPKRKQQN TQTEEKATSI EEQEQVMAMK LQWSAELIHA IVTENADHEA ADVKSTKDLR 480 IELVRRQGDQ VIACLADIVK TLDQIHLLVQ ERK

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MKGEQTVSEF QQSNRGSGSR QTRSQVAPDW TETDLLILVN EISAVEADCQ KEFSSFQKWK  60
IIAQNCTALG VPRSLDQYRR KWEALLHDYK IIRHWNSQSR ASASYWVLES ERRKQFGLPR  120
NFDRELFKAI GDYEKVRENQ SDTEPDSEPE AEVEADMPEE DEVVEPESKR RRRRSTKQKS  180
SPVKNPARSC MVKKPVQKPR QTHAEEKPVR KPRQMHVQEK TVVKPVQTHV AEKPLEKPRQ  240
THLEGKPVER PGQTQAEEKP VERPRQTHAK EKPVEKPSQT HAEEKPVEIL VEGKPAEKPP  300
QTDAEENAVG KTCQTHVEGK PGQTHAEEKH VESCLEEIPM ENLAEEKPLQ THAEEKPLQT  360
HAEEKPMGSC LEALPTKNLA EEMPHKSCLK KKYKASEEQP VGSCLEEVIP MNSVVEKKPQ  420
KSRPKRKQQN TQTEEKATSI EEQEQVMAMK LQWSAELIHA IVTENADHEA ADVKSTKDLR  480
IELVRRQGDQ VIACLADIVK TLDQIHLLVQ ERK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	174	KRRRRR
2	169	198	KRRRRRSTKQKSSPVKNPARSCMVKKPVQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	6e-45	Trihelix family protein