PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G00750

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 352aa MW: 39371.2 Da PI: 8.9227

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G00750	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177	5.2e-55	13	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++ Ro02_G00750 13 LPPGFRFHPTDEELITFYLMNKISDATFTG-RAIADVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSaTS 109 79***********************999.89***********99999************************************98788 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 elvg+kktLvfy+grap+gek++Wvmheyr+ Ro02_G00750 110 ELVGMKKTLVFYRGRAPRGEKSNWVMHEYRI 140 99*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MSTEDHANKE DNLPPGFRFH PTDEELITFY LMNKISDATF TGRAIADVDL NKCEPWELPA 60 KAKMGEKEWY FFSLRDRKYP TGVRTNRATN TGYWKTTGKD KEIFNSATSE LVGMKKTLVF 120 YRGRAPRGEK SNWVMHEYRI HSKSSFRTSK DEWVVCRVFQ KSAGVKKYPP SNQSSSSSRA 180 ANPYNLELIG PSVNVVQSPI MQLGHEHQFP NYGRNYMTNA ELVELSRVLR GGGIIPGSTS 240 SPMNLPFLQP QFNYPNIGGG GFTISGLNLN LGGPSSQPNI RPMPPSLHQA PLAMNHQQDV 300 SNSSMMTSTS GALGQDQTGY GTDMNNGNLP AGNRYMNMVD QCVDLDNYWP PY

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MSTEDHANKE DNLPPGFRFH PTDEELITFY LMNKISDATF TGRAIADVDL NKCEPWELPA  60
KAKMGEKEWY FFSLRDRKYP TGVRTNRATN TGYWKTTGKD KEIFNSATSE LVGMKKTLVF  120
YRGRAPRGEK SNWVMHEYRI HSKSSFRTSK DEWVVCRVFQ KSAGVKKYPP SNQSSSSSRA  180
ANPYNLELIG PSVNVVQSPI MQLGHEHQFP NYGRNYMTNA ELVELSRVLR GGGIIPGSTS  240
SPMNLPFLQP QFNYPNIGGG GFTISGLNLN LGGPSSQPNI RPMPPSLHQA PLAMNHQQDV  300
SNSSMMTSTS GALGQDQTGY GTDMNNGNLP AGNRYMNMVD QCVDLDNYWP PY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-111	NAC family protein