PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G00727

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 1043aa MW: 114963 Da PI: 5.0558

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G00727	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.5e-18	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l Ro02_G00727 37 KGQWTPEEDEILRRAVQSFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799**************************9.**********986 PP
2	Myb_DNA-binding	66.4	5e-21	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++vk++G++ W+tIa++++ gR +kqc++rw+++l Ro02_G00727 89 KGPWSKEEDEIIIELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	46.5	8.5e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E++ l++a++ +G++ W+ + ++ gRt++ +k++w+ Ro02_G00727 141 KEAWTQDEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1043 aa Download sequence
MDGERTNSTP EGPGGDSIQR ARALHGRSSG PTRRSTKGQW TPEEDEILRR AVQSFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVKKYGPK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLKSGLLP DFEETPHVGH QNQPLLSSCS RMQNSGDDSV PRGAEGEEIS 240 ECSQDSTVAG CFQSATEMVN VVLHTRDRSH ITEASRLGND PSSSPASCSE PYYPSMGDAT 300 FSIPEIPPEM IEQSFSHDAG ASMSGDFQFN IHELTNISSL ESGQEASGIH THCMSNESHD 360 VVNFPFQTSS AFTVSTSMGN MAVGSVKSER MLISDDECCR ALFSEAMNQG YYFSRDFTNG 420 SNMVDLIACT DSLLLQSSSL QMSETSRSSQ LYCPMSSDVV GTSCSQAVSA QDGPLIFAGE 480 PNHLFRVQEQ EYVTSSNDGF VYTNDTARSP CNDGANKTRM QEQSDQVKDP SNLLPVNTFD 540 SGLETQTSPT VDVRSDVHTE QQDAGALCYE PPRFPSLDIP FLSCDLIQSG NDMQQEYSPL 600 GIRQLMMSSM NCLTPFRLWD SPSRDGSPDA VLKSAAKTFT GTPSILKKRH RDLLSPLSPL 660 SDRRIDKKLG TDVTSSLARD FSRLEVMFED SETQKAPLHS PSSNQHRNFD APEEDKENMD 720 TCETRIEKGT DTAAISADEI AQKDFDDSES QEKMKQGTAD VGSKTMADDV PSFHDAQQSS 780 GVLAEHNTND LLLYSPDQAG CKAEKALSLS SRTPRNQHCK SFSAKQCASV ITPTITVKKR 840 ENYSVAETCI QSDLLSAPLE TTSDNAGNGA STETIFGDTP LKRSIDSPSA WKSPSAWKSP 900 SAWKSPWFIN SFLPGPRVDT EITIEDIGFF MSPGDRSYDA IGLMKQISEH TAAAYANAQE 960 VLGNETPETV LKERQKERGI VDLDKNHAPP SQLGSSSLSA PNIMVERRTL DFSECGTPGK 1020 GKENIKSSNT KSFSISGPVK SIY

Sequence ? help Back to Top

Protein Sequence Length: 1043 aa Download sequence

MDGERTNSTP EGPGGDSIQR ARALHGRSSG PTRRSTKGQW TPEEDEILRR AVQSFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVKKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLKSGLLP DFEETPHVGH QNQPLLSSCS RMQNSGDDSV PRGAEGEEIS  240
ECSQDSTVAG CFQSATEMVN VVLHTRDRSH ITEASRLGND PSSSPASCSE PYYPSMGDAT  300
FSIPEIPPEM IEQSFSHDAG ASMSGDFQFN IHELTNISSL ESGQEASGIH THCMSNESHD  360
VVNFPFQTSS AFTVSTSMGN MAVGSVKSER MLISDDECCR ALFSEAMNQG YYFSRDFTNG  420
SNMVDLIACT DSLLLQSSSL QMSETSRSSQ LYCPMSSDVV GTSCSQAVSA QDGPLIFAGE  480
PNHLFRVQEQ EYVTSSNDGF VYTNDTARSP CNDGANKTRM QEQSDQVKDP SNLLPVNTFD  540
SGLETQTSPT VDVRSDVHTE QQDAGALCYE PPRFPSLDIP FLSCDLIQSG NDMQQEYSPL  600
GIRQLMMSSM NCLTPFRLWD SPSRDGSPDA VLKSAAKTFT GTPSILKKRH RDLLSPLSPL  660
SDRRIDKKLG TDVTSSLARD FSRLEVMFED SETQKAPLHS PSSNQHRNFD APEEDKENMD  720
TCETRIEKGT DTAAISADEI AQKDFDDSES QEKMKQGTAD VGSKTMADDV PSFHDAQQSS  780
GVLAEHNTND LLLYSPDQAG CKAEKALSLS SRTPRNQHCK SFSAKQCASV ITPTITVKKR  840
ENYSVAETCI QSDLLSAPLE TTSDNAGNGA STETIFGDTP LKRSIDSPSA WKSPSAWKSP  900
SAWKSPWFIN SFLPGPRVDT EITIEDIGFF MSPGDRSYDA IGLMKQISEH TAAAYANAQE  960
VLGNETPETV LKERQKERGI VDLDKNHAPP SQLGSSSLSA PNIMVERRTL DFSECGTPGK  1020
GKENIKSSNT KSFSISGPVK SIY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein