PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ro02_G00582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 1587aa MW: 176124 Da PI: 7.1684 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 66.4 | 8.4e-21 | 953 | 1082 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 ppGfrF P++ +l+++yL +k ++ ++ ++i+e+ d+ + +P +Lp +k+++++wy ++ + + ++++tksgyWk + + Ro02_G00582 953 PPGFRFYPSEAQLLSYYLPNKKANPAIPGgYNMIRELhDLPERDPFELPDtlcysyGYKGRKRHWYCYTAAVVS------EEKKTKSGYWKRKARV 1042 9********************999997772456***99**********95477765445566688888776554......456789********** PP NAM 90 kevlskkgelvglkktLvfykgrapkge.ktdWvmheyrl 128 ++v+s++g + g++++++f g++p++ tdWv+ +y+l Ro02_G00582 1043 RDVVSREGVVLGTRTSFAFCVGDSPNTAlATDWVLYQYAL 1082 ********************9988776549********87 PP | |||||||
2 | NAM | 81.1 | 2.4e-25 | 1305 | 1433 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppG+rF P++e+l+++yL +k +++ + ike+d+y+++P +Lp + +++++wy ++ r k +r +ksgyWk +g+ Ro02_G00582 1305 LPPGCRFYPSEEQLLCYYLSNKNAEHAkSGGYDLIKELDLYDHDPFSLPdYacysyGHGGRKRHWYCYTVRVLK-------ERRAKSGYWKRKGRA 1393 79********************888773445678***************5366543223355688888887664.......344689********* PP NAM 90 kevlsk.kgelvglkktLvfykgrapk.gektdWvmheyr 127 ++v+ + ++++ g + ++ fy g++pk +++tdWv+ +y+ Ro02_G00582 1394 RDVVGRgGKAVLGRRSSFEFYLGNSPKtAVRTDWVLYQYA 1433 *****9566679*********997766167*********6 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1587 aa Download sequence |
MAQIQVQHQA PVTGPNGVPS GQQQMVSTSL YVGDLDQNVT DSQLYDLFNQ VGQVVSVRVC 60 RDLSTRRSLG YGYVNYSNPQ DAARALEVLN FTPLNSKSIR ICYSLRDPTI RKSGTGNIFI 120 KDPDDAAKAV ELLNGKQFDD KEWYVGKAQK KNEREVELKE KFEHSMKEAS DKFQGVNLYI 180 KNLDDSIGDE KLKEIFSEYG TVTSCKVMRD PEGVSRGSGF VAFSTSEEAS RALLDMNGKM 240 VVSKPLYVAL AQRKEERRAR LQAQFSQMRP VAMAPSVAPR LPMYPPGAPG LGQQFLYGQG 300 PPAIIPQQAG FGYQQQLVPG LRPGGAPMPN FFVPMVQQGQ QGQRPGGRRG AGPVQQNQQQ 360 VPLMPQHMIP RGRMYRYPPG RNMPEVPFSG GMLSVPYDMG GMPMRDPAGG RAMPVPALAS 420 SLANATPEEQ RTMLGEALYP QVDALEPDSA AKVTGMLLEM DQTEVLHLLE SPEALKAKVA 480 EAIEVLRNVT QHQANNSADQ LASLSLSDKL PFYLAPADLA MLSVHYIQKG LFFTKPPEAA 540 NNPDFMDSLL EKLKHSLALA LVHFYPLAGR FVTKQEQDPP LYLVYVDCTN SPGAKFIHAS 600 LDMSISEILS PIDVPLVVQS LFDHDRAVNH DGHTTSLLTI QVTELVDGVF IGLSINHCLV 660 DGTSYWHFFN TWSEIFRAQE KKFPVSEISS PPVLDRWFPE GHGPIISLPF KGPEEFIDRF 720 EAPVLRERMF HFSSESIAKL KSKANSECKS SKISSFQALS ALMWRTITRA RGLPPDQETS 780 CRLAANNRGR IDPPLSPNYF GNSIFPIRSE GVKAGELFEH GLGWAAWKLH EAVVNHNDKV 840 IKGLRDAWMQ SPSVYSLRYF DPHSVMMGSG PRFDMYGNEF GMGKAVALRS GYANKFSGKV 900 SSFQGRQSGS IDLEVCLPPE AMTALESDHE FMEVASGRPM LSIMADSRAA AFPPGFRFYP 960 SEAQLLSYYL PNKKANPAIP GGYNMIRELH DLPERDPFEL PDTLCYSYGY KGRKRHWYCY 1020 TAAVVSEEKK TKSGYWKRKA RVRDVVSREG VVLGTRTSFA FCVGDSPNTA LATDWVLYQY 1080 ALVNHVEGSF VLCRVFFRSD SGLNSCAENN DGVLMPDPVS ISSIQLDEQA QVRPGNAHPI 1140 PAFLPPSSLQ QLFNGQAPIV PAQAVPPPVE SFSAVLTTAL VNATPEQRRT MLGEKLYPLV 1200 EMWEKDRTAK VTGMLLEMDN TEILHLLESP EALRARVADA MHSITTLTEG FKGTLLLLLL 1260 LINPSESQIS SSLAQNRKSE NLRAKADDIP IHMGEGDTKP SSYYLPPGCR FYPSEEQLLC 1320 YYLSNKNAEH AKSGGYDLIK ELDLYDHDPF SLPDYACYSY GHGGRKRHWY CYTVRVLKER 1380 RAKSGYWKRK GRARDVVGRG GKAVLGRRSS FEFYLGNSPK TAVRTDWVLY QYAQLDHLQA 1440 SFVLCRVFVR SQGGTSISEN GLSSCAEVTV STVRHIGIQH DGFYAPHIVH EIHGDKSVPR 1500 NTDKSKDQMR LETEVDNQVM TGPLSISSIQ INEQVPSSVL GDSSPLLLDA LATEHLLSII 1560 EGDFIELALK EICSAPRRQG LTGLKNV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62380.1 | 1e-21 | NAC family protein |