PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G00580
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 158aa    MW: 17885.8 Da    PI: 9.0581
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G00580genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-173786255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Ro02_G00580 37 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 86
                 69*****99.**********9...336*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MEGEYSCSSS SSSSTTSLEK RKKRQQDHDH DDNQEKPYRG IRMRKWGKWV AEIREPNKRS  60
RIWLGSYTTP VAAARAYDTA VFYLRGPSAR LNFPELVFQE GQLHDMSSAS IRKKATEVGA  120
KVDAIQTALR SPSSQSKTGC RVNPDLNEYP DPENSDDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.16e-54ERF family protein