PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G00580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ERF | ||||||||
Protein Properties | Length: 158aa MW: 17885.8 Da PI: 9.0581 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1.1e-17 | 37 | 86 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Ro02_G00580 37 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 86 69*****99.**********9...336*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence |
MEGEYSCSSS SSSSTTSLEK RKKRQQDHDH DDNQEKPYRG IRMRKWGKWV AEIREPNKRS 60 RIWLGSYTTP VAAARAYDTA VFYLRGPSAR LNFPELVFQE GQLHDMSSAS IRKKATEVGA 120 KVDAIQTALR SPSSQSKTGC RVNPDLNEYP DPENSDDN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 6e-54 | ERF family protein |