PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G00571
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 325aa    MW: 35383.2 Da    PI: 9.9836
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G00571genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.6e-32252310259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D+y+WrKYGqK++kgs++pr+YY+C+s+ gCp++k+ver+ +dp+++++tYeg+Hnh+
  Ro02_G00571 252 ADEYSWRKYGQKPIKGSPHPRGYYKCSSHrGCPARKHVERAVDDPTMLIVTYEGDHNHS 310
                  69************************9988****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MAVELMMGLV DSFAAKMEEN DVKEAASAGI QSVEKFISLM SSSSSSEPAS LEYRAVADMA  60
VNKFKKVISL LDKGRTGHAR YRRAPPVTLP QQILTTKETG QPSFQYQDPQ TMKTEQSQSS  120
SASAFKVYCP KPVLRLPPLP HQGTTTTGHT FSASPTISGS NSFMSGDGEN TTLQHSMSSG  180
FRLTNMSASS AGKPPLPSSS FKRKCHSVDD AAALRCGSSS SSRCHCSKKR KSRVKKVMRI  240
PAISMKMADI PADEYSWRKY GQKPIKGSPH PRGYYKCSSH RGCPARKHVE RAVDDPTMLI  300
VTYEGDHNHS HAVTEAMAAI VLEST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.18e-91WRKY family protein