PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G00539
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 264aa    MW: 30162.3 Da    PI: 9.1788
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G00539genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.83e-28958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l  +s
  Ro02_G00539  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSFFS 58
                 79*******************************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSFFSGS  60
TSIEDTVARY VNLQRHEQGR PMSTDVDHVK QIQQQILFCK SQLKEVENQL RIFEGNLFET  120
TTLREIELRE QILKETLNRL HMRKVHLAPN INKLVSNATR STTQSTILDP QIEILNFLSA  180
NGLLPIRDEI IAPQPVLHLG GRNTNLDNND EINPASSVDQ DENNNSRSVQ IQQHPKMGQV  240
IDVNLSPWNQ FYPTGTVSKC PYNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-39MIKC_MADS family protein