PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G00514

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 308aa MW: 33537.6 Da PI: 8.3038

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G00514	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.5	5e-29	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++++++++++ Ro02_G00514 2 SCNGCRVLRKGCSETCILRSCLrwidsPESQGNATLFLAKFFGRSDLLSFISAVPENQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCHTAVQ 99 6*********************************************************************************************9998 PP DUF260 94 lal 96 ++l Ro02_G00514 100 TVL 102 876 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MSCNGCRVLR KGCSETCILR SCLRWIDSPE SQGNATLFLA KFFGRSDLLS FISAVPENQR 60 PALFQSLLFE ACGRTVNPVS GAVGLLSSGN WHVCHTAVQT VLSGGVLRPF PAVLTPILDE 120 SSDTFSRGAC AVQNLHYQSM YYVNDVERSQ PLDVGLSLEP NLAVAGGRGR GRGRSCAMRD 180 TVSFNSEDSV MTTSGGDSNG DRKLLKLFYL RWDSLIMMIM TCHNCRFVKG LVSYSGFHGF 240 VLAVHVRISA NYITLLLSIN CYFGNEKVEM DGAVHVSLIH GHSPPPLEVG STASPPPKII 300 PFLRNIGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-61	LBD family protein