PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G29886
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 93aa    MW: 11034.8 Da    PI: 10.5391
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G29886genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-16653148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed+ll + v+++G g W+ ++++ g++R++ +c++rw +yl
      Ro01_G29886  6 KGAWSKQEDDLLRQFVEKHGEGKWHQVPKKTGLRRCRRSCRLRWVNYL 53
                     79********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    
MDVTRKGAWS KQEDDLLRQF VEKHGEGKWH QVPKKTGLRR CRRSCRLRWV NYLKPTIKSG  60
DFEEDEIDLM IRLQKLLGNR QVPSSIHIFI SLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-27MYB family protein