PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G29782
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 351aa    MW: 38713.7 Da    PI: 10.2836
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G29782genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.2e-114090146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
      Ro01_G29782 40 KQKWTPEEEAALKAGVLKHGAGKWRTILSDKEfgavlHLRSNVDLKDKWRN 90
                     79**************************999888***88***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MMPIVFCIPM RFCFSVAGIE DMHGHFVLKS FGRLLMGAPK QKWTPEEEAA LKAGVLKHGA  60
GKWRTILSDK EFGAVLHLRS NVDLKDKWRN INVTAIWGSR QKAKLALKRN VPTPKHDNNP  120
LAVSTVVPSH EEIVDAKPLA SSGGKLQNTE SKQPIARLDH LIFEAITNLK EPRGSDRATI  180
TMYIEDQYWA PSNLNKLLST KLKHMTANGK LVKVKHRYRI PPSSATSEKR RSSSTLLSEG  240
KQKDSTRADK SVVSILTKSQ VDAELTMIRS MTAQEAAAAA AQAVAEAEAA IAAAEEAARE  300
AEAAEAEAEA AQVFAKAAVK ALKCRRLGKV SFCKDLRDVL IFRYNNEKVY Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.18e-74MYB_related family protein