PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G29577
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 282aa    MW: 31036.7 Da    PI: 8.3064
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G29577genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.61.9e-19138171134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Ro01_G29577 138 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 171
                  *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MAPPFLELST IGSHDHDQYD HHHHDLFNYL EPQSSFSSST SSFSSPMFLT PAQVQGPISD  60
HYYREPQNFQ FQLLEADHIA SYGGSFDHDQ TLGNEGELIN LSIDSKNGAD DHRNHENRSS  120
RAENISVNSN NTNPIRVCSD CNTTKTPLWR SGPRGPKSLC NACGIRQRKA RRAMAVAAAA  180
ANGTTLAVEA APSMIKTSKV KLKDNKTIPF KKRCHKLTTS PSPRGKSKTK LCFEDFTISS  240
MTQNSGTPPP TTTTTTFQRV FPQDEKEAAI LLMALSCGLV HG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.16e-21GATA family protein