PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G26782

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 377aa MW: 42114.6 Da PI: 7.7734

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G26782	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.5e-17	113	158	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ Ro01_G26782 113 RGHWRPAEDSKLKELVAQFGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 158 899***************************.*********996 PP
2	Myb_DNA-binding	55.7	1.1e-17	165	208	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ Ro01_G26782 165 RRAFSEEEEERLLSAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 208 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGPQHHQMST SSTRYHQDLN FFPPPTPQLC LANTFGAMAC QSIANPEMGL NQTKKLPWNF 60 QPLENGGKTN IITSDGVHDK KDITMSLNQE EADHDDVIQS PAAAASKTKL CARGHWRPAE 120 DSKLKELVAQ FGPQNWNLIA EHLDGRSGKS CRLRWFNQLD PRINRRAFSE EEEERLLSAH 180 RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKHREESSV YKRRKPSSNS QAIIPHHDHD 240 RDPDGTSFHK NNASSDHSTI SINDESASTC THLSLTPSNR AGLPSFFTKI SPFQQQKTFG 300 AQMDSGAGFG RIKGYENGHY KTGQSDSNSE TTSGDESVVT TNRTNNNVSV YGEDQNGNHD 360 KISVMPFIDF LGVGSTT

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGPQHHQMST SSTRYHQDLN FFPPPTPQLC LANTFGAMAC QSIANPEMGL NQTKKLPWNF  60
QPLENGGKTN IITSDGVHDK KDITMSLNQE EADHDDVIQS PAAAASKTKL CARGHWRPAE  120
DSKLKELVAQ FGPQNWNLIA EHLDGRSGKS CRLRWFNQLD PRINRRAFSE EEEERLLSAH  180
RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKHREESSV YKRRKPSSNS QAIIPHHDHD  240
RDPDGTSFHK NNASSDHSTI SINDESASTC THLSLTPSNR AGLPSFFTKI SPFQQQKTFG  300
AQMDSGAGFG RIKGYENGHY KTGQSDSNSE TTSGDESVVT TNRTNNNVSV YGEDQNGNHD  360
KISVMPFIDF LGVGSTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	2e-72	MYB family protein