PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G26399

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 531aa MW: 60050.8 Da PI: 8.0039

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G26399	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.9	9.3e-28	154	219	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGse...........kAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++ +AtPkt+++lm+++gLtl+h+kSHLQkYRl Ro01_G26399 154 KPRLKWTPDLHERFIEAVNQLGGADtddtnfmlsdpEATPKTVMKLMGIPGLTLYHLKSHLQKYRL 219 79*******************98444444444456**************************8 PP
2	Myb_DNA-binding	63.5	4.1e-20	156	218	1	48
TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT++++e++++av+qlGg t+kt+++ mg g+tl+++ks++qky+ Ro01_G26399 156 RLKWTPDLHERFIEAVNQLGGAdtddtnfmlsdpeaTPKTVMKLMGiPGLTLYHLKSHLQKYR 218 89****************99**************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
NKDNIDLFPS RCDYWIGSIS FFPIKILFYA SQAFSIPPPI FFIKTCSAHP LVVRNIAKYK 60 EKRDSNLAYR KREQSSLKVV IIIIIIIVRH PADPDRMMYH HHHQHQHQHQ HQHQEKSIHS 120 SSSRMAIPPE RRHLFLQPET CPGDSGLVLS TDAKPRLKWT PDLHERFIEA VNQLGGADTD 180 DTNFMLSDPE ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS KNLHGHANSG TNKIGTVAVA 240 VTGERIPEAN ATHMNNMSIG PQSNKGLHIN ETLQMQIEVQ RKLHEQLEVQ RHLQLRIEAQ 300 GKYLQSVLEK AQETLGRQNL GTVGLEAAKV QLSELVSKVS TQCLNSAFTE LKEVQGLCPQ 360 NQPTDCSMDS CLTSCEGSKK DQEIQNSSGM GIRAYNSRVL LESKEIAEET MPHQKDNNIF 420 VSTLSKNVEQ RMFPSETRSG DLSMSIGLQR EKWNGSNCNS EERFKGRNTD DSFLDHTNNR 480 ADSVKVDQTQ KVSQAYRSVP YFAAKLDLNS HEDTDASSSC KQFDLNGFSW S

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

NKDNIDLFPS RCDYWIGSIS FFPIKILFYA SQAFSIPPPI FFIKTCSAHP LVVRNIAKYK  60
EKRDSNLAYR KREQSSLKVV IIIIIIIVRH PADPDRMMYH HHHQHQHQHQ HQHQEKSIHS  120
SSSRMAIPPE RRHLFLQPET CPGDSGLVLS TDAKPRLKWT PDLHERFIEA VNQLGGADTD  180
DTNFMLSDPE ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS KNLHGHANSG TNKIGTVAVA  240
VTGERIPEAN ATHMNNMSIG PQSNKGLHIN ETLQMQIEVQ RKLHEQLEVQ RHLQLRIEAQ  300
GKYLQSVLEK AQETLGRQNL GTVGLEAAKV QLSELVSKVS TQCLNSAFTE LKEVQGLCPQ  360
NQPTDCSMDS CLTSCEGSKK DQEIQNSSGM GIRAYNSRVL LESKEIAEET MPHQKDNNIF  420
VSTLSKNVEQ RMFPSETRSG DLSMSIGLQR EKWNGSNCNS EERFKGRNTD DSFLDHTNNR  480
ADSVKVDQTQ KVSQAYRSVP YFAAKLDLNS HEDTDASSSC KQFDLNGFSW S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-137	G2-like family protein