PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G26157 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ERF | ||||||||
Protein Properties | Length: 168aa MW: 19474 Da PI: 10.5358 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.4 | 7.2e-13 | 98 | 141 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 +++GV + + +g++++eIrdp + + r++l +fgta +Aak +++ Ro01_G26157 98 HCRGVQQQP-WGKYAVEIRDP---NrRGSRVWLRTFGTAIKAAKTYDR 141 68*******.**********9...4334******************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence |
MATLDHVLTL ELIKNHLLGE FSPMIKSSPV TKLSTSSSAS DLSKSQSRSS STSQTLIEIS 60 NYLDNELFNF TSNPISNNFF EFETKPQKTV PNEEKKRHCR GVQQQPWGKY AVEIRDPNRR 120 GSRVWLRTFG TAIKAAKTYD RGEKMRQEEK KWRKKKEKEE KSFRQNSV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 158 | RKKKEK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 7e-23 | ERF family protein |