PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G24352
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ARF
Protein Properties Length: 845aa    MW: 94139.8 Da    PI: 6.2934
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G24352genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.1e-23132233199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  Ro01_G24352 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 226
                  99*****************************9777666.49************************************************..8899999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Ro01_G24352 227 LLGIRRA 233
                  ****997 PP
2Auxin_resp117.51.1e-38258341183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aaha st+s F+v+YnPras+seFv++++k+ ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Ro01_G24352 258 AAHASSTNSCFTVFYNPRASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 341
                  79*******************************986599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MKLSTSGFGQ QPQDHEGGGG EKKCLNSELW HACAGPLVSL PTSATRVVYF PQGHSDQVAA  60
TTNKQVDAHI PNYPSLPPQL ICQLHNVTMH ADVETDEVYA QMTLQPLTPQ EQKETFLPME  120
LGIPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSLQPPAQ ELIARDLHDV  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRATRPQTVM  240
PSSVLSSDSM HIGLLAAAAH ASSTNSCFTV FYNPRASPSE FVIPLSKYIK AVFHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSLFPLRLKR PWHPGASSMH DNRDEAANSL MWLRGGTGEQ GLQSMNFQAV  420
GMFPWMQQRL DSTLMGNDPN QQYQAMLAAG LQNIGSGDQL RQHVMHFQQP LQYLQQPGSH  480
NPLLQLQQQV MQQSVSHNML QVQPQVSMEN LPQHLLQPQF NNQTEEPQQP QNTYHDALKV  540
QSEQLHQSPQ MNVPSPSFSK TDFTDSSTKL SGSTTTRQNT LSSLCPEGSG NLLNISRAGH  600
SMPAEQLPQQ SWAPKFAHAQ VNAFANSMSF PPFNEKGNSV EQENCNSDSQ NPTLFGVNIE  660
SSGLLFPTTV PNFATSSNDA DMPMPLGNSG FQSSLYGCMQ DSSELLHGAG QVDPPTPNCT  720
FVKVYKSGSV GRSLDISRFS SYNQLREELA QMFGIEGKLE DCLRSGWQLV FVDRENDVLL  780
LGDDPWESFV NNVWYIKILS PEDVHKMGDQ AVESFSPNVG QRMNSSGNET QDRVSGLPSL  840
GSLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein