PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G24157
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GeBP
Protein Properties Length: 304aa    MW: 34715.8 Da    PI: 9.1402
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G24157genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57331.64.4e-10851513097
       DUF573  30 psddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  +  + ++fy ++k+++s     +ql +K+++L++K++++ +  ++++ ++++++hd  +++ls+k W+
  Ro01_G24157  85 VLYNAKEFYIYIKDRLSHAGYWTQLRDKVKHLREKYRTQFAM-SKNDAIELKTPHDIMMYNLSMKAWR 151
                  4557899********************************999.788899******************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MASSSIQEYQ LDSSSVATVE GSSTEASLRK KTTTNTNTKQ QQKKKNISIP NPPVPTPTAD  60
DDDDSKAANP KREKKKMRYN AKDKVLYNAK EFYIYIKDRL SHAGYWTQLR DKVKHLREKY  120
RTQFAMSKND AIELKTPHDI MMYNLSMKAW RDKFAKKEGE KDKFAKKEGE KDKFAKKEGE  180
KDNFEDDGDD DEPLQGEDQA EAGAGAGAGA GKLNKKKVQA ASVAVEEGDD DDDYVDDRVV  240
PHALRDYFQS ELFDGRWVDD DQLRSLETKW KKLQVSRANY KSAKSQFKAM LYQLAVQGYN  300
MNKM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278REKKKMR