PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G24153

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 461aa MW: 51653.4 Da PI: 6.6116

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G24153	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.4	9.2e-56	23	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdee++++yL++kv ++++ + ++i ++d++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+ gyWkatgkdke++++ Ro01_G24153 23 LPPGFRFHPTDEEIITFYLTEKVMNSNFAA-TAIGDADLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATDCGYWKATGKDKEIFKRksn 119 79***********************999.88***********99999*************************************9544 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ lvg+kktLvfy+grapkgekt+Wvmheyrl Ro01_G24153 120 NNCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 152 4445*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MMEEAIVVNQ GGSQGEGHEL MDLPPGFRFH PTDEEIITFY LTEKVMNSNF AATAIGDADL 60 NKCEPWDLPK KAKMGEKEWY FFCQRDRKYP TGMRTNRATD CGYWKATGKD KEIFKRKSNN 120 NCLVGMKKTL VFYRGRAPKG EKTNWVMHEY RLDGKFAHYN LSSKAAKDEW VVCRVFHKNM 180 GLKKTTSPLS PTDYQGGQLL RMNSFGDDFL DSSSSLPPLM DPTPSNDKPG SYGCYRFDYG 240 EHSDHDSKGK ITAAASNKTA SDIQYGINYL NHFQVGSSTR QLPNAAASGS YQMSNPMGTP 300 TMLYPQIHHH HQLIPNHSFS FQPNNPDYYF QQEIRAHNTS IPNNQGSSFD FRSSASDHQA 360 ILQAMAAAKN NNHNIETSIA AAPAGDSRQC KVEQFSSNQS MFSLSQDTGL STVDMNTTTE 420 ISSSVVSKQE IEVGSSNTLY EDRLESPSVV PISDIEGLWD Y

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MMEEAIVVNQ GGSQGEGHEL MDLPPGFRFH PTDEEIITFY LTEKVMNSNF AATAIGDADL  60
NKCEPWDLPK KAKMGEKEWY FFCQRDRKYP TGMRTNRATD CGYWKATGKD KEIFKRKSNN  120
NCLVGMKKTL VFYRGRAPKG EKTNWVMHEY RLDGKFAHYN LSSKAAKDEW VVCRVFHKNM  180
GLKKTTSPLS PTDYQGGQLL RMNSFGDDFL DSSSSLPPLM DPTPSNDKPG SYGCYRFDYG  240
EHSDHDSKGK ITAAASNKTA SDIQYGINYL NHFQVGSSTR QLPNAAASGS YQMSNPMGTP  300
TMLYPQIHHH HQLIPNHSFS FQPNNPDYYF QQEIRAHNTS IPNNQGSSFD FRSSASDHQA  360
ILQAMAAAKN NNHNIETSIA AAPAGDSRQC KVEQFSSNQS MFSLSQDTGL STVDMNTTTE  420
ISSSVVSKQE IEVGSSNTLY EDRLESPSVV PISDIEGLWD Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-103	NAC family protein