PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G21313
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 1013aa    MW: 113265 Da    PI: 4.4116
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G21313genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.35.5e-3111113198
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                  +p+G+rFhPt+eelv++yLkkk++g++ e++++i+e+d++k+eP++Lp+    +++a ++ ew+fF+++d ky+++ r+n++tk+gyWk  gk++ ++
  Ro01_G21313  11 VPVGYRFHPTEEELVNHYLKKKMQGNDSEIKDIIPEIDVCKYEPNELPAllgtETEAgDDMEWFFFTRKDYKYNNSARSNKSTKQGYWKIIGKERGIK 108
                  599*********************************************6566633332556************************************9 PP

          NAM  94 skkge 98 
                  +++++
  Ro01_G21313 109 ARRSK 113
                  96544 PP
2NAM110.61.8e-3431244511128
          NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                  +eel+++yL+kk +g++ e++++i+e+d++k+eP+dLp+               ++++++ +wyfFs+r  ky+++ r+nr+t++g Wk +gkd+ ++
  Ro01_G21313 312 NEELLSHYLEKKNHGTDSEISDIIPEIDVCKHEPHDLPAlvfasaefldkewfrMADSSDMQWYFFSPRGYKYSNSPRTNRTTQQGSWKIQGKDRGIK 409
                  69************************************66899999999998865556788************************************* PP

          NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ +++++g k+tL+fy+  +pk++kt+Wv+hey l
  Ro01_G21313 410 ARgSKAEIGRKRTLTFYERGKPKAKKTSWVIHEYYL 445
                  *966677***************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    
MNKEKTTPPS VPVGYRFHPT EEELVNHYLK KKMQGNDSEI KDIIPEIDVC KYEPNELPAL  60
LGTETEAGDD MEWFFFTRKD YKYNNSARSN KSTKQGYWKI IGKERGIKAR RSKAGDFVIC  120
RLKNKSDQKD SSIYDGGEPG TCHVASNSEN ANSENEAADD MILEAQENGE LLFHPPQLPL  180
DDCCSALQSP ISLELEDVLQ ANGTNGDCNE LQSPFGDNGS CFCDKNEVST YDEDETVYDM  240
FPEVHPQTER NPESSFYPLQ PQDYTLHAAI DFLNTSFADP EYYSSEETTP TPFKDSNLPN  300
SLGRNYHWDR WNEELLSHYL EKKNHGTDSE ISDIIPEIDV CKHEPHDLPA LVFASAEFLD  360
KEWFRMADSS DMQWYFFSPR GYKYSNSPRT NRTTQQGSWK IQGKDRGIKA RGSKAEIGRK  420
RTLTFYERGK PKAKKTSWVI HEYYLTQANS DPPKQIGDFV LCCLRNKSDK SDHDNKDSPL  480
CNGGEPGKVL PILNGNDDEA EPGSGSYHIM ASDFENQAAA DGMITEVEEN LAFKELENFL  540
LISGGNDDDE AEPGSGSYHI FESDFENQAA SNGMITEAEE NRAFKELEDA LQIPNGNEDA  600
FNGLQTAGSC LIGNDKNELS NCVEGHPDSC NLSDIDMVDE LLNEPENPDS LLLQSPTSTK  660
MGQVAHTANV HNDECRKRSY PFADSDPSLT KKKYISTNDD DELVWNIASN SENQAPYGNP  720
EGYPQPGANL GLVFDSFQPQ DYDSALLSIN GGPRDFSHDN NFIEWDDLLS SFEDTDSSLA  780
KFSDTIIDGG SGVSSDRNTE VVHESVKYHS ALAIGATSNE NIKTRPCNNV SLTRIITFGD  840
ILLQKLQRSP SNMKCSANHS FSAFLELEAL ETSSLFWTSM SKIQNSQLQD DQQLVSTSSD  900
RLVNISTDIP SSDQTSCQPK YRYLFLISIA FKCPKIKGHN HPNPFLQSPI VNPQITKTPA  960
KHQYHPISNH GVRQTWEALL EESDCRAASQ AKVSEAAESD LNQVVEADNS SKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-30NAC family protein