PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G21067

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 339aa MW: 38290.8 Da PI: 7.2249

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G21067	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	8.7e-10	88	112	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f G C+ G++C++aHg Ro01_G21067 88 YKTRLCANFKN-GACRNGENCNYAHG 112 9********.***********8 PP
2	zf-CCCH	28.8	2.1e-09	150	172	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f + +C+yGdrC+F H Ro01_G21067 150 MKLCKKFNNGEECPYGDRCNFLH 172 689****66********** PP
3	zf-CCCH	42.7	9.4e-14	231	257	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C+ + +tG C++G++C+FaHg+ Ro01_G21067 231 WKTKICNKWEQTGKCPFGEKCHFAHGQ 257 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MNFSDHTSFM PAQSPYVGGS DAVNCWPHFP MNNEDQHSQF EQQAPPFKRP RNSEETQSNP 60 MPYPPAMNNS RVHPPNAPVN RGANNIFYKT RLCANFKNGA CRNGENCNYA HGIEDIRQPP 120 PNWQELVTVR DEDRPLTGNW EDDQKIIHRM KLCKKFNNGE ECPYGDRCNF LHEEPAKFRE 180 DSGRYRENTA ISIGTTGAPM THGSSTNNSE DTRPVNTGMD AFRVNMKPVY WKTKICNKWE 240 QTGKCPFGEK CHFAHGQAEL QVPGLRAEAE VMTTTPISMK PQAVPANDSS TIAMATMPAA 300 LNEEVQGKKC GLKWRGSKKI NQINRIYGDW LDDVPLVES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	8e-96	C3H family protein