PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G21067
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 339aa    MW: 38290.8 Da    PI: 7.2249
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G21067genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.7e-1088112126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt+lC +f   G C+ G++C++aHg
  Ro01_G21067  88 YKTRLCANFKN-GACRNGENCNYAHG 112
                  9**********.*************8 PP

2zf-CCCH28.82.1e-09150172325
                  S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                  ++lC+ f  + +C+yGdrC+F H
  Ro01_G21067 150 MKLCKKFNNGEECPYGDRCNFLH 172
                  689******66************ PP

3zf-CCCH42.79.4e-14231257127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt++C+ + +tG C++G++C+FaHg+
  Ro01_G21067 231 WKTKICNKWEQTGKCPFGEKCHFAHGQ 257
                  8************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MNFSDHTSFM PAQSPYVGGS DAVNCWPHFP MNNEDQHSQF EQQAPPFKRP RNSEETQSNP  60
MPYPPAMNNS RVHPPNAPVN RGANNIFYKT RLCANFKNGA CRNGENCNYA HGIEDIRQPP  120
PNWQELVTVR DEDRPLTGNW EDDQKIIHRM KLCKKFNNGE ECPYGDRCNF LHEEPAKFRE  180
DSGRYRENTA ISIGTTGAPM THGSSTNNSE DTRPVNTGMD AFRVNMKPVY WKTKICNKWE  240
QTGKCPFGEK CHFAHGQAEL QVPGLRAEAE VMTTTPISMK PQAVPANDSS TIAMATMPAA  300
LNEEVQGKKC GLKWRGSKKI NQINRIYGDW LDDVPLVES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.18e-96C3H family protein