PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G20197
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 289aa    MW: 31985.2 Da    PI: 6.5984
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G20197genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-184493255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Ro01_G20197 44 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 93
                 799******.7*********32...35**********************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MEFQFQQQKH ISFPAAHTHK ASGIPISSKG KLKGSRSRSN NTNKFVGVRQ RPSGRWVAEI  60
KDTTQKIRMW LGTFETAEEA ARAYDEAACL LRGNNTRTNF ITHVSLDSPL ASRIQNLLNT  120
KKLGPNCKQH QTSTSTASHP PTSKSTSSIS TTSSSTSSGS DTTTLSSEVS NQESHHQLSG  180
DVYKPDLSNC NQPFDQWSTA TCSSYRSNVS WVDGFSFAQQ VFDLPKDETT ANLSADEATD  240
SDDLLEFERM KVERQISASL YAMNGVQEYM DTVHDANEAL WDLQPLCSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-27ERF family protein