PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G19809

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 426aa MW: 47108.5 Da PI: 6.3281

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G19809	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.6	5.7e-33	234	289	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFvea++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Ro01_G19809 234 KQRRCWSPELHRRFVEALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 289 79****************************************************97 PP
2	Myb_DNA-binding	46.1	1.1e-14	236	287	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e++ ++v+a +qlGg t+k I + m+ g+t ++ks++qky+ Ro01_G19809 236 RRCWSPELHRRFVEALQQLGGSqvaTPKQIRELMQvDGLTNDEVKSHLQKYR 287 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MELTLDSNTV FIPKTISDFL SQVSAIKDCS QRSSKLDGYV KRLEDEMRKI EVFKRELPLC 60 MIILKDAIER LKEEVMQCGE MEDRPVIAEF VPLKKSNSDE HGGVVSGKEN SDMKSWMSSA 120 QLWSSSNNFD YSKSELKSRN EEDDRSVPEN PIEVSNKRSR GGAFVQFKGN NESGFARTCV 180 KEDKEVSQVP SLSLMTPMTE LGGSKSSTRG GSGPSLVKLQ IEPQQQSQQQ CFRKQRRCWS 240 PELHRRFVEA LQQLGGSQVA TPKQIRELMQ VDGLTNDEVK SHLQKYRLHV RKVPASAAAE 300 GNGLWMNQDH CGDHSKANSS ESGSPQSPLL GIEFAKGGQS TTGGDSTQTE EDDQKSDGHS 360 WKGARHNSGG DSFNLRSIDW EADTCCLPST STQTSLLSGS LDINLILQLS SCKDNSGSTT 420 KQSPSR

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MELTLDSNTV FIPKTISDFL SQVSAIKDCS QRSSKLDGYV KRLEDEMRKI EVFKRELPLC  60
MIILKDAIER LKEEVMQCGE MEDRPVIAEF VPLKKSNSDE HGGVVSGKEN SDMKSWMSSA  120
QLWSSSNNFD YSKSELKSRN EEDDRSVPEN PIEVSNKRSR GGAFVQFKGN NESGFARTCV  180
KEDKEVSQVP SLSLMTPMTE LGGSKSSTRG GSGPSLVKLQ IEPQQQSQQQ CFRKQRRCWS  240
PELHRRFVEA LQQLGGSQVA TPKQIRELMQ VDGLTNDEVK SHLQKYRLHV RKVPASAAAE  300
GNGLWMNQDH CGDHSKANSS ESGSPQSPLL GIEFAKGGQS TTGGDSTQTE EDDQKSDGHS  360
WKGARHNSGG DSFNLRSIDW EADTCCLPST STQTSLLSGS LDINLILQLS SCKDNSGSTT  420
KQSPSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	2e-54	G2-like family protein