PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G18760
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 668aa    MW: 74393 Da    PI: 6.5475
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G18760genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-192479156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++  +++t++q++ Le++F+++++p+ ++r++L+++lgL+ +q+k+WFqN+R++ k
  Ro01_G18760 24 KKAYHRHTSQQIQHLEAFFKNCPHPDDNQRRQLSMELGLEPQQIKFWFQNKRTQTK 79
                 678899***********************************************988 PP
2START124.71.2e-391874063206
                  HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  a +a++e+++  + +ep+W +           +n+d+  q+     +     ++e +++sg+v+  +  lv  +ld + +W   ++    ka+t+ev+
  Ro01_G18760 187 AASAMEEFIRILQINEPMWIQCHndgryvlNHDNYDKLFQRANH--FktstARVESSKDSGIVTISALHLVDMFLDAN-KWVDLFPtivtKAKTIEVL 281
                  6789*******************888877777788887777744..255889**************************.99999988889******** PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  + g      g lqlm+ ++  lsplv  Rdf+f+R ++q + g+wvi+dvS d  +  ++     R+ +lpSg+++++++ng skvtwvehv++++++
  Ro01_G18760 282 QAGmlgnqsGCLQLMYGQMHILSPLVLpRDFYFLRLCQQIELGTWVIMDVSYDCFKGSTT----HRSWRLPSGCMVQDMPNGCSKVTWVEHVEVDDKI 375
                  *************************966***********************999888873....77777****************************9 PP

                  X.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 p.hwllrslvksglaegaktwvatlqrqcek 206
                    h l+r lv  ++a ga++w  tlqr ce+
  Ro01_G18760 376 QtHRLYRDLVCGRIAYGAQRWIVTLQRMCER 406
                  99***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    
MDLAMGNGNG GASGDEQEAS DSRKKAYHRH TSQQIQHLEA FFKNCPHPDD NQRRQLSMEL  60
GLEPQQIKFW FQNKRTQTKT QTERADNSAL RAENSRIQCE NYAIREALKN HDKVATLLSK  120
YIGKPLSQID SLTYAAGSSL DLSPGILMNQ AMRSPNLTNP AIGNNAALAY QVYTIPEMEK  180
KLMAETAASA MEEFIRILQI NEPMWIQCHN DGRYVLNHDN YDKLFQRANH FKTSTARVES  240
SKDSGIVTIS ALHLVDMFLD ANKWVDLFPT IVTKAKTIEV LQAGMLGNQS GCLQLMYGQM  300
HILSPLVLPR DFYFLRLCQQ IELGTWVIMD VSYDCFKGST THRSWRLPSG CMVQDMPNGC  360
SKVTWVEHVE VDDKIQTHRL YRDLVCGRIA YGAQRWIVTL QRMCERYACS IDEVSSSHEF  420
GAIFAVPEGK SSIMKLSHRM VKNFCGMLSM SGKLDFPQLS EVNNSGVRVN VRKSIEPGEP  480
NGMVVIAATS LWLPLPSQDV FNFFTDEKTR MQWDVLCNGN PVNKIAHIPT GAHPGNCISI  540
IQPFIPTESN MLLLQESYID PLGSMVIYAP VEVATINIAV EGEVDSSDIA ILPSGFIISD  600
DGRPDIGTSS STNPVRSGGS LLTLAYQILV PFPSHSHLLN VESVATVNTL ISSTVQKIKY  660
ALNCAGLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein