PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G18500

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 228aa MW: 25994.4 Da PI: 7.2759

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G18500	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.9	2.7e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g+lKKAeELSvLCda++a+iifsstgkl+ey+s Ro01_G18500 9 KKIDNATARQVTFSKRRRGLLKKAEELSVLCDADIALIIFSSTGKLFEYAS 59 68***********************************************86 PP
2	K-box	50.9	6.9e-18	91	172	18	99
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++++L kei +++R++ Ge+L+ L+l+eLq+Le+ Le++l ++ +kK e ++++i elq+ +l een++L++++ Ro01_G18500 91 NTNYSRLSKEIAAKSHQLRQMRGEELHGLNLEELQHLEKSLESGLGRVVEKKGEKIMKEITELQRNAVQLIEENERLKQQVV 172 56899**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MAREKIQIKK IDNATARQVT FSKRRRGLLK KAEELSVLCD ADIALIIFSS TGKLFEYASS 60 SMKEILERHH LHSKNLDKLE QPSLELQLVE NTNYSRLSKE IAAKSHQLRQ MRGEELHGLN 120 LEELQHLEKS LESGLGRVVE KKGEKIMKEI TELQRNAVQL IEENERLKQQ VVERTKGVQR 180 HVHADSENRF TEEGQSSESV TNLCNSNNAP QDYDSSDTSL KLGLPYSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-103	MIKC_MADS family protein