PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G18237

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 370aa MW: 41209.2 Da PI: 6.4192

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G18237	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	9.2e-19	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++++G g+W++ ++ g++R++k+c++rw +yl Ro01_G18237 35 KGPWTPEEDQKLMNYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 82 79********************************************97 PP
2	Myb_DNA-binding	55.7	1.1e-17	88	133	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l Ro01_G18237 88 RGKFSQEEEQTILNLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 133 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MEGWIGRRQP NLLDHLLGRE KMGRSPCCDD SGLKKGPWTP EEDQKLMNYI QKHGHGSWRA 60 LPKLAGLNRC GKSCRLRWTN YLRPDIKRGK FSQEEEQTIL NLHSILGNKW SAIASHLPGR 120 TDNEIKNFWN THLKKKLIQM GFDPMTHRPR TDIFSSLPHL LALVNLKELI DQGSSHTSWD 180 EQALRLQAEA AQMARIQYLQ YLLQPQASTS NNLNDFTDIE TISLLNSLCS SIKDVNPVFG 240 SSQLETSAQY LGSSSVQDSI PFSPLPDLQI VPSSAYQKDM IINQAPDQFT VLSQGDNSPN 300 NISWNIPSSS NTSTPSPPSL AAPPVMETST SNNNMGDACS TTTSSYGGVA TNSAWSDLLL 360 EDYPFFNEIS

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MEGWIGRRQP NLLDHLLGRE KMGRSPCCDD SGLKKGPWTP EEDQKLMNYI QKHGHGSWRA  60
LPKLAGLNRC GKSCRLRWTN YLRPDIKRGK FSQEEEQTIL NLHSILGNKW SAIASHLPGR  120
TDNEIKNFWN THLKKKLIQM GFDPMTHRPR TDIFSSLPHL LALVNLKELI DQGSSHTSWD  180
EQALRLQAEA AQMARIQYLQ YLLQPQASTS NNLNDFTDIE TISLLNSLCS SIKDVNPVFG  240
SSQLETSAQY LGSSSVQDSI PFSPLPDLQI VPSSAYQKDM IINQAPDQFT VLSQGDNSPN  300
NISWNIPSSS NTSTPSPPSL AAPPVMETST SNNNMGDACS TTTSSYGGVA TNSAWSDLLL  360
EDYPFFNEIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-106	MYB family protein