PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G17465

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 307aa MW: 33980.9 Da PI: 7.1539

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G17465	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.5	2.8e-15	239	263	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ ++++GtC+yGd+C+FaHg Ro01_G17465 239 KTELCNKWQESGTCPYGDNCQFAHG 263 9***********************8 PP
2	zf-CCCH	24.4	5.2e-08	276	301	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt +Cr + GtC+yG rC+F H+ Ro01_G17465 276 YKTQICRMVLTRGTCPYGHRCHFRHS 301 9**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
METNSTASPN SSPLSNCATQ PAPESTDYSS FFPPKFTLPS SLSLTPSTLS DDERDEDCNT 60 MQLVLECQDL RDHLHDLNNV IDSLRRENAN LRSANTDLVK LLSSPAAFQS FLNASAYLNP 120 FLADDFRPLG AGVLGPRDGV GSDEASDISP TSVIMERNRF NADRFSLPKS ISVRSSGYKR 180 VNQSFGTNQR QQEGPIELVS GPQKVYLGGG KRDQVEEGCS TAAAAAAMKV KAYNQGMLKT 240 ELCNKWQESG TCPYGDNCQF AHGIRELRPV VRHPRYKTQI CRMVLTRGTC PYGHRCHFRH 300 SLDHQER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	3e-59	C3H family protein