PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G17465
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 307aa    MW: 33980.9 Da    PI: 7.1539
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G17465genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.52.8e-15239263226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ ++++GtC+yGd+C+FaHg
  Ro01_G17465 239 KTELCNKWQESGTCPYGDNCQFAHG 263
                  9***********************8 PP

2zf-CCCH24.45.2e-08276301126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt +Cr  +  GtC+yG rC+F H+
  Ro01_G17465 276 YKTQICRMVLTRGTCPYGHRCHFRHS 301
                  9**********************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
METNSTASPN SSPLSNCATQ PAPESTDYSS FFPPKFTLPS SLSLTPSTLS DDERDEDCNT  60
MQLVLECQDL RDHLHDLNNV IDSLRRENAN LRSANTDLVK LLSSPAAFQS FLNASAYLNP  120
FLADDFRPLG AGVLGPRDGV GSDEASDISP TSVIMERNRF NADRFSLPKS ISVRSSGYKR  180
VNQSFGTNQR QQEGPIELVS GPQKVYLGGG KRDQVEEGCS TAAAAAAMKV KAYNQGMLKT  240
ELCNKWQESG TCPYGDNCQF AHGIRELRPV VRHPRYKTQI CRMVLTRGTC PYGHRCHFRH  300
SLDHQER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-59C3H family protein