PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G16891
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 310aa    MW: 35426 Da    PI: 6.6817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G16891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-5171311128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lp+GfrFhPtdeelv++yL kk++++++++  +ike+d+yk++Pw+Lp ++  +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ +   +
  Ro01_G16891   7 LPAGFRFHPTDEELVNHYLIKKCASQTISV-PIIKEIDLYKFDPWQLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKHIGK--PK 101
                  799***************************.88***************6666689*************************************98..77 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  + g+kk Lvfy g+apkg+kt+W+mheyrl
  Ro01_G16891 102 ALGIKKALVFYAGKAPKGVKTNWIMHEYRL 131
                  8***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MKAELELPAG FRFHPTDEEL VNHYLIKKCA SQTISVPIIK EIDLYKFDPW QLPDMALYGE  60
KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKHIGKP KALGIKKALV FYAGKAPKGV  120
KTNWIMHEYR LANVDRSATK KNHNLRLDDW VLCRIYNKKG SIEKHNIAST DRNRAATYSE  180
IMDHEQKPEL INTLVAAAPS QMPSAVPVAQ PQHMDMLSGD YSVPRLQHTT DYSSSSEHVL  240
SPEVQSEFQW SSPELDNSLN MNFLDNNDQF KYMDGVSLAD IDDPFGTQAQ AQAQYQMDQL  300
DLFMYLQNQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-113NAC family protein