PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G11245

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 456aa MW: 49593.6 Da PI: 7.4506

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G11245	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93	2.3e-29	190	248	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+Y+rC++a gCpv+k+v+r aed++++++tYeg+H h+ Ro01_G11245 190 SDGCQWRKYGQKMAKGNPCPRAYFRCSMAaGCPVRKQVQRLAEDKTILITTYEGKHSHP 248 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MNEKAGCDLK LLHSDHNFLG LSSSSDHRLI KDETLSFKEV KEVDFFSTNK PSDQPAPAHE 60 NLPALQLQVE LQRGLEENQK LKTMLDQITK SYSKLQAQLH LVMQKQAQNR LQQLQTCAEG 120 SNLDPSTQNW GSTSPKNPNL SSLHDDQPPK SSTHHDKDDQ EQVPATTDDQ VPLRRARVTV 180 RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR AYFRCSMAAG CPVRKQVQRL AEDKTILITT 240 YEGKHSHPLP PAAISMANTT SAAAAMLVSG STTSKQEAHH QLTNSTGLFS SLQLPYASPM 300 ATFSTSLPFP TITLDLTHTP NPNSNPIQFM HTSATSFPLP LQGYNHHQLV GHPMCLNFPQ 360 PNSTALPPEA MQLADPRHGS MVEKITAAIT SDPNFTTALA AAISSINNVE NSNGGPQRST 420 NDISSPTAST SNGNVVCAGF PGSPQLPQSC TTFSIT

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MNEKAGCDLK LLHSDHNFLG LSSSSDHRLI KDETLSFKEV KEVDFFSTNK PSDQPAPAHE  60
NLPALQLQVE LQRGLEENQK LKTMLDQITK SYSKLQAQLH LVMQKQAQNR LQQLQTCAEG  120
SNLDPSTQNW GSTSPKNPNL SSLHDDQPPK SSTHHDKDDQ EQVPATTDDQ VPLRRARVTV  180
RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR AYFRCSMAAG CPVRKQVQRL AEDKTILITT  240
YEGKHSHPLP PAAISMANTT SAAAAMLVSG STTSKQEAHH QLTNSTGLFS SLQLPYASPM  300
ATFSTSLPFP TITLDLTHTP NPNSNPIQFM HTSATSFPLP LQGYNHHQLV GHPMCLNFPQ  360
PNSTALPPEA MQLADPRHGS MVEKITAAIT SDPNFTTALA AAISSINNVE NSNGGPQRST  420
NDISSPTAST SNGNVVCAGF PGSPQLPQSC TTFSIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-71	WRKY family protein