PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G11221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24183.7 Da PI: 8.2181 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.1 | 3.1e-25 | 10 | 57 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+n + rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgklye Ro01_G11221 10 RIDNCTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLYEC 57 8*********************************************95 PP | |||||||
2 | K-box | 79.7 | 7e-27 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++++ +q+e++ L++e++nLq+++R+++Ge+L L +keL+ Le+qLe sl+ iR +K+++l+++ie+l +k + ++++n++L kk+ Ro01_G11221 81 NPASEMKFWQREVNILREELQNLQENHRQFMGEQLCGLGVKELKGLENQLEMSLQDIRLTKEKILTDEIEDLNQKGNFIHQQNMELYKKV 170 678899********************************************************************************9996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MGRGKIVIQR IDNCTSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TGKLYECASN 60 SMKSVIERYN KNKEEHQQLL NPASEMKFWQ REVNILREEL QNLQENHRQF MGEQLCGLGV 120 KELKGLENQL EMSLQDIRLT KEKILTDEIE DLNQKGNFIH QQNMELYKKV FGTSALNPES 180 RNGCIPFGMS TSEESHLPIH LQLSRSDQQT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-92 | MIKC_MADS family protein |