PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G10689
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 386aa    MW: 42407.4 Da    PI: 6.8513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G10689genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.4e-20153202255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ +l+g
  Ro01_G10689 153 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDKAAYNLRG 202
                  59******9.**********965...5*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MAAAIDIYSS SSTMAPELSE ELMIALMPYM KSASSTSSIS SPTSISTSSY SSYTPLFSSS  60
QPNLYPDLCS NTQLFPPLGF EQTGSLGLNQ LTPSQIHQIQ TQMVLQQQQQ KQQIAALAPL  120
PNQYHHQNPR TLNYLGPKAI PMKQSGTPKA TKLYRGVRQR HWGKWVAEIR LPKNRTRLWL  180
GTFETAEEAA LAYDKAAYNL RGDFARLNFP HLKHQGAHIS GDFGNYKPLH SAVDAKLQAI  240
CQSLAANSPK QGKTEELCSE TETKPMISAP NMVFDDSLRT ELKTEWESPK LEAFSSSSSP  300
SRSSDESSAG SSSPESDITF LDFSDSQWDE NETFGLAKFP SLEIDCGGLP NANGHNNSAF  360
GGVPAKVNRI STRKINPTVE MCSHFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-58ERF family protein