PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G10347 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 21178.9 Da PI: 8.301 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 222.1 | 1.6e-68 | 6 | 162 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 + +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++++ +++ +n++ ++++ ++++++ Ro01_G10347 6 DPVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAQNYNHNAQNYRIDSGSSSKGNKKIATR-- 93 5679*********************************************9999999985........44555555555555444444444444442.. PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ d+++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Ro01_G10347 94 DSIADHHATEERGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 162 33445555555679*****************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MSNCIDPVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQAQNYN HNAQNYRIDS GSSSKGNKKI ATRDSIADHH ATEERGVNRP PEKRQRVPSA 120 YNQFIKEEIQ RIKANNPDIS HREAFSTAAK NWAHFPHIHF GLMLETNNQA KLDNGSEKHL 180 MSRAALLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.1 | 6e-86 | YABBY family protein |