PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G07732

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 380aa MW: 41196.8 Da PI: 6.8341

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G07732	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00051	242	280	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Ro01_G07732 242 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 280 6677889999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MNRGHVLQSS PVQQMMAAGN PNWWNINSMR APTNQPSSSS PFLPPPHHPS FLIPQFAHSN 60 SSSSLPFIPS WHDTNNNQEL PESWSQLLLG GLVGEDDKAG GMRQLFHQAK KLEDWEEEIL 120 SSQAHPNAPV NVDVKQENSV AGSFVYGHHH GNSNNNEDFQ SAALCSLSQI MPTTAASASS 180 PKSSCVTSFS SNMLDFSNKS EVRHPPPSRS SSECNSSANG GAVKKARVQP SSSSAQPTFK 240 VRKEKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ SQIEALSLPY LGSGSPNMRQ 300 QSAVVHGERN CMFPEDPGQL LNDNCMKRKG VNSEQDAYEE PKKDLRSRGL CLVPVSCTLQ 360 VGSDNGADYW APAALGGGFQ

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MNRGHVLQSS PVQQMMAAGN PNWWNINSMR APTNQPSSSS PFLPPPHHPS FLIPQFAHSN  60
SSSSLPFIPS WHDTNNNQEL PESWSQLLLG GLVGEDDKAG GMRQLFHQAK KLEDWEEEIL  120
SSQAHPNAPV NVDVKQENSV AGSFVYGHHH GNSNNNEDFQ SAALCSLSQI MPTTAASASS  180
PKSSCVTSFS SNMLDFSNKS EVRHPPPSRS SSECNSSANG GAVKKARVQP SSSSAQPTFK  240
VRKEKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ SQIEALSLPY LGSGSPNMRQ  300
QSAVVHGERN CMFPEDPGQL LNDNCMKRKG VNSEQDAYEE PKKDLRSRGL CLVPVSCTLQ  360
VGSDNGADYW APAALGGGFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	9e-89	bHLH family protein