PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G07704
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Trihelix
Protein Properties Length: 362aa    MW: 42243.4 Da    PI: 4.5283
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G07704genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.71.5e-13125209286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt+  v +L+e+  ++  +l+r++l+  +W ev++k+ ++ ++ers +qC++ ++ l+++ykk+k+  ++    sss+++y++++e
  Ro01_G07704 125 WTELAVFVLLEVWGDRFLQLGRKSLRSEDWHEVAQKVsEASKMERSDTQCRNMLDMLKRKYKKEKAKIEEM-GLSSSKWAYYKKME 209
                  *************************************677899***********************99986.89999********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MDDMEDDERY NPKPYSLNHH NSSNRRKIHF RSTPYSRPAT NRYEEEYDDA IDELDGENYQ  60
EDDVVVEEHY QHHPHDLNRN LDADNGFEWH PKKRKLKNLD SGYEFAPRVK LPNRVGPSSR  120
AEEDWTELAV FVLLEVWGDR FLQLGRKSLR SEDWHEVAQK VSEASKMERS DTQCRNMLDM  180
LKRKYKKEKA KIEEMGLSSS KWAYYKKMEM LMASSMRQEC GLACGVDNGE YVFMNTRVYL  240
EKSNGFDEMM DSPGESETDE DDNGNDQNGF PPRHGGGGGS EGSSFRVLAD SIQKFGEIYE  300
NIESSKRQQM MELEKMRRDF NKEMELQKKQ ILERAQAEIA KIQEADDDDD DDTDTSAEDL  360
SE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-83Trihelix family protein