PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ro01_G07693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 202aa MW: 23781 Da PI: 8.1671 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 19 | 41 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s k + +Hi tH Ro01_G07693 19 YYCEYCGICRSKKTLIASHILTH 41 89********************6 PP | |||||||
2 | zf-C2H2 | 22.2 | 3.7e-07 | 62 | 83 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Ro01_G07693 62 TCEECGATFKKPAYLKQHMQSH 83 6*******************99 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence |
MDKGEAEEKR PVFRDIRRYY CEYCGICRSK KTLIASHILT HHKDEMEMAK ADEEVEMEKS 60 NTCEECGATF KKPAYLKQHM QSHSLELSWT QWKHSALKRL KSNLLQHVKA VHLQQKPFAC 120 SFSGCGKTFS YKHVRDKHEK SGCHGDFEEA DEQFRSRPRG GRKRKCPTVE MLVRKRVTPP 180 DEFGPESEFL FRFFSQEEED EQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 157 | 165 | RPRGGRKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72050.1 | 2e-31 | C2H2 family protein |