PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G07634

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 470aa MW: 51711.3 Da PI: 7.4555

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G07634	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	260	315	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Ro01_G07634 260 KARRCWSPDLHRRFVSALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 315 68****************************************************97 PP
2	Myb_DNA-binding	39.2	1.6e-12	262	313	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W+++++ ++v a ++lGg t+k I + m g+t ++ks++qky+ Ro01_G07634 262 RRCWSPDLHRRFVSALQMLGGSqvaTPKQIRELMKvDGLTNDEVKSHLQKYR 313 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MGAASPSELS LECKPHSYSM LLKSFGEHHH QAATTTPSHD LNLKQLEEIL SRLEEERLKI 60 DAFKRELPLS MQLLTTAVEA SRQQLQAYRS SSANNQGPIR PVLEEFIPLK HSNSEGSEKP 120 TNSSDKANWM TSVQLWSQAD ATKPKEQGDM GFNVSPKLAL DTKKQRSYGG AFHPFSKDIH 180 NSGPSPNLQP LPELALGSPE NKHPDNMDHD NKCSELGENG INCGVVTTTQ DQQGKAIEGQ 240 TSNITTTNTS TSTQNSSHRK ARRCWSPDLH RRFVSALQML GGSQVATPKQ IRELMKVDGL 300 TNDEVKSHLQ KYRLHTRRPS PSPQAAGGPT PQLVVLGGIW VPPEYATAAH NGPTALYSPA 360 SHAPTHYCAT PMPQDFYTTA QQPPQSAHHQ LHHHTLHHQL HVYRTSTASR TQSSPESDLR 420 GNGDRSESIE DGKSESGSWK AGTESGEKGM AARRSEDREE SNASQITLKF

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MGAASPSELS LECKPHSYSM LLKSFGEHHH QAATTTPSHD LNLKQLEEIL SRLEEERLKI  60
DAFKRELPLS MQLLTTAVEA SRQQLQAYRS SSANNQGPIR PVLEEFIPLK HSNSEGSEKP  120
TNSSDKANWM TSVQLWSQAD ATKPKEQGDM GFNVSPKLAL DTKKQRSYGG AFHPFSKDIH  180
NSGPSPNLQP LPELALGSPE NKHPDNMDHD NKCSELGENG INCGVVTTTQ DQQGKAIEGQ  240
TSNITTTNTS TSTQNSSHRK ARRCWSPDLH RRFVSALQML GGSQVATPKQ IRELMKVDGL  300
TNDEVKSHLQ KYRLHTRRPS PSPQAAGGPT PQLVVLGGIW VPPEYATAAH NGPTALYSPA  360
SHAPTHYCAT PMPQDFYTTA QQPPQSAHHQ LHHHTLHHQL HVYRTSTASR TQSSPESDLR  420
GNGDRSESIE DGKSESGSWK AGTESGEKGM AARRSEDREE SNASQITLKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-112	G2-like family protein