PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G05116

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 351aa MW: 40021.7 Da PI: 5.5863

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G05116	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.7	8.2e-08	290	323	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Ro01_G05116 290 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 323 469*****************************87 PP
2	ELK	29.1	2.2e-10	244	265	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Ro01_G05116 244 ELKHELKQGYKEKIVDIREEIL 265 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MAFHHHQTPH EMAFHSSFAS PDQQPPQLAP TWLNAAPFRQ QQSSFSRNDD VVISPSGKSG 60 DRGGEEDEED ELDCESGRFK ADIVGHPLYE QLVSAHVSCL RIATPVDQLP KIDEQLVQSQ 120 RVVDKYSAMR ANGDFQVMDE KELDLFMTNY VLLLCSFKEQ LQQHVRVHAM EAVMACWELE 180 QSLQSLTGVS TAEGTGATMS DDDDQFDSDI NSYDASLDGH DTMGFGPLVP TESERSLMER 240 VRQELKHELK QGYKEKIVDI REEILRKRRA GKLPGDTTSV LKAWWQTHSK WPYPTEEDKA 300 RLVQETGLQL KQINNWFINQ RKRNWHSNLS TTSVLKSKRK SPKFTTGEKT T

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MAFHHHQTPH EMAFHSSFAS PDQQPPQLAP TWLNAAPFRQ QQSSFSRNDD VVISPSGKSG  60
DRGGEEDEED ELDCESGRFK ADIVGHPLYE QLVSAHVSCL RIATPVDQLP KIDEQLVQSQ  120
RVVDKYSAMR ANGDFQVMDE KELDLFMTNY VLLLCSFKEQ LQQHVRVHAM EAVMACWELE  180
QSLQSLTGVS TAEGTGATMS DDDDQFDSDI NSYDASLDGH DTMGFGPLVP TESERSLMER  240
VRQELKHELK QGYKEKIVDI REEILRKRRA GKLPGDTTSV LKAWWQTHSK WPYPTEEDKA  300
RLVQETGLQL KQINNWFINQ RKRNWHSNLS TTSVLKSKRK SPKFTTGEKT T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-151	TALE family protein