PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G05087
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ARR-B
Protein Properties Length: 686aa    MW: 75752.4 Da    PI: 5.3187
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G05087genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.41.3e-27202255155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv av+qL G e+A+Pk+il+lm+v+gL++e+v+SHLQkYR 
  Ro01_G05087 202 KPRVVWSVELHRKFVAAVKQL-GVERAVPKKILDLMDVEGLSRENVASHLQKYRQ 255
                  79*******************.********************************6 PP
2Myb_DNA-binding38.33e-12204254148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v avkqlG +   +k+I   m  +g++++++ s++qky+
      Ro01_G05087 204 RVVWSVELHRKFVAAVKQLGVEraVPKKILDLMDvEGLSRENVASHLQKYR 254
                      678***********************************************7 PP
3Response_reg78.13.1e-26161241109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ l+ +l+k +y +v+++ ++ +al++l+e+   +Dl++ D++mp+mdG++ll+ +  e  +lp+i+++++++ e++ + ++ Ga 
   Ro01_G05087  16 VLAVDDDPTCLKFLEGLLRKCKY-HVTTTNQAIKALDMLRENGdkYDLVISDVNMPDMDGFKLLELLGLEM-DLPVIMLSGYSDTELVMKGISHGAC 110
                   799********************.***************888778*********************96644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   Ro01_G05087 111 DYLLKPVRIEELKN 124
                   ***********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    
MTVEDQRDRF PEGMRVLAVD DDPTCLKFLE GLLRKCKYHV TTTNQAIKAL DMLRENGDKY  60
DLVISDVNMP DMDGFKLLEL LGLEMDLPVI MLSGYSDTEL VMKGISHGAC DYLLKPVRIE  120
ELKNIWQHVI RKKKLEPNDQ KKSSYQDKAC NGTGEGVQGA SPTGIADQNG KLNKKRKDQN  180
GDEEEESEDD EHENEESSSQ KKPRVVWSVE LHRKFVAAVK QLGVERAVPK KILDLMDVEG  240
LSRENVASHL QKYRQYLKRL SSGMVASLGG KESSYVRMGV LDGFGDLHSL TRSGRLSSTA  300
LPSYTSGGML HRLNSPAGLS RGGITSSSLV PHGHSQNLSN YINTFSKLQP TVPANQSPNL  360
FQVTPASLEL NQLQQSKGTT HIGKPYADND PTSYAASSRF RDSGVSCSSF PSDSDFSSNV  420
LMLQGIPQQT HGMGVFGNQP SLKVSFDIGI SGSSNFLDYN RCSESFHGGA QLSTFPSNSL  480
PMSEPSNHSQ LLADNLGVSS SRPQMGNTLN DFSSVSALSA PVDELRGNTQ NQEGLIGDVV  540
PTVNYTPTQR WEEHKRDYNH DLNHTFRTIN SLGSTLGVDG LVSQSLDQND AVCNYERNSS  600
LFDQLNRATA TAMHPSEADK SFVETKMKPN EDYFLEQTKS PNGFVQNSYE SLNDIMSTIM  660
KREQNDENML LDAEFGFDAY TLGSCI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-102ARR-B family protein