PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G04143
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 320aa    MW: 34741.5 Da    PI: 10.1464
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G04143genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31249306359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYe eHnh+
  Ro01_G04143 249 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEAEHNHS 306
                  99************************988****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MAVDFMGYRN FSAKLEENAV QEAASGLESV EKLIRLLSQT SQQKQEKYQS MEMDCTAVAD  60
VAVSKFKKVI SLLGRTRTGH ARFRRAPLAL ASPPSVAQPH QPTKVPLESS SARVYHATPI  120
QQIPPPILHH GGGVMEGTKD SSTTINFSSY SSAGTTSFMS SLTGDSDSKQ PMSSSAFQIT  180
NMSQVSSAGK PPLSSSSFKR KCSSETLGSG KCGASSSGRC HCTKKRKLRL KRVVRVPAIS  240
LKMADIPPDD YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERALD DPSMLVVTYE  300
AEHNHSLNVA EASTLILESS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.19e-68WRKY family protein