PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G04130

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 528aa MW: 58694.2 Da PI: 7.3861

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G04130	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.8e-17	163	212	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Ro01_G04130 163 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 212 78*****************......55**********************997 PP
2	AP2	41.9	2.5e-13	257	307	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ +Aa+a+++a+ k +g Ro01_G04130 257 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 307 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MWDLNDSPDQ RRLDDESEGC SSQKTNSADG DDDKGKRVGS VSNSSSSAVV IEDGSDDEDT 60 NPNASGNRKR GSKIFGFSVM NGTDPEPVTR QFFPVDESCE MGPAPGGVAA EKAASSSSSF 120 PRAHWVGVKF CQSDSAAPGK PAEGLSQQQP MKKSRRGPRS RSSQYRGVTF YRRTGRWESH 180 IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFN IEDYEEDLKQ EQMSNLTKEE 240 FVHVLRRQST GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EIDAARAYDK 300 AAIKCNGKEA VTNFDPSIYE SELNPTEPSG NNAGDHNLDL SLGNPNQKKK NQAFGTAQNQ 360 AHQNAAMEPQ QQQSASMQFE ADWRSNQGFR PKPREDSDNR RRDGYLENET MQLLLRTNLQ 420 SPSPTQMHKY GQFNQFRNPA GETPAQVSHN FPPHTFNPPN YQIQFPSSSE VGGRIGSDLS 480 LSMSDRQQWQ SGHHPSDLFA TAAASSGFPP QNGWLQKNNG FHSLTRRT

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MWDLNDSPDQ RRLDDESEGC SSQKTNSADG DDDKGKRVGS VSNSSSSAVV IEDGSDDEDT  60
NPNASGNRKR GSKIFGFSVM NGTDPEPVTR QFFPVDESCE MGPAPGGVAA EKAASSSSSF  120
PRAHWVGVKF CQSDSAAPGK PAEGLSQQQP MKKSRRGPRS RSSQYRGVTF YRRTGRWESH  180
IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFN IEDYEEDLKQ EQMSNLTKEE  240
FVHVLRRQST GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EIDAARAYDK  300
AAIKCNGKEA VTNFDPSIYE SELNPTEPSG NNAGDHNLDL SLGNPNQKKK NQAFGTAQNQ  360
AHQNAAMEPQ QQQSASMQFE ADWRSNQGFR PKPREDSDNR RRDGYLENET MQLLLRTNLQ  420
SPSPTQMHKY GQFNQFRNPA GETPAQVSHN FPPHTFNPPN YQIQFPSSSE VGGRIGSDLS  480
LSMSDRQQWQ SGHHPSDLFA TAAASSGFPP QNGWLQKNNG FHSLTRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-127	AP2 family protein