PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G02980

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GRF

Protein Properties

Length: 370aa MW: 41906.3 Da PI: 8.2474

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G02980	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.4e-24	78	121	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e Ro01_G02980 78 DPEPGRCRRTDGKKWRCSKEAFADSKYCERHMHRGKNRSRKPVE 121 79***************************************987 PP
2	QLQ	61.5	2.3e-21	12	47	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i++ Ro01_G02980 12 PFTPSQWQELEHQALIYKYMVSGIPIPPDLLFSIKR 47 8*******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MMSSSGRSMR FPFTPSQWQE LEHQALIYKY MVSGIPIPPD LLFSIKRSCL DTPPLSSKLF 60 SPHIGWNCFQ MGLGRKIDPE PGRCRRTDGK KWRCSKEAFA DSKYCERHMH RGKNRSRKPV 120 EVFKATPPTL ANSNSNSSTS PINKIINPPP NSLSTPFHSL SSLSSNESSY NSSTSTHLDD 180 HPFLYARPNI GLSQQERSTS LFLDSGSCNN TLHPNLEYRR SNRFGYGVKE EVDEHAFFSE 240 PSGSVRGGFS GSSSSLDHNH HESNWQLTMS CSNSSSKQRT CSALQTEHYP HLQLQNFTDS 300 KMERREETQR TIHHFFDEGP LKDRDSSWLD LDDNNKSSNS GSVSTTRLSI SIPNSAHDFP 360 IFNSRNHHED

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MMSSSGRSMR FPFTPSQWQE LEHQALIYKY MVSGIPIPPD LLFSIKRSCL DTPPLSSKLF  60
SPHIGWNCFQ MGLGRKIDPE PGRCRRTDGK KWRCSKEAFA DSKYCERHMH RGKNRSRKPV  120
EVFKATPPTL ANSNSNSSTS PINKIINPPP NSLSTPFHSL SSLSSNESSY NSSTSTHLDD  180
HPFLYARPNI GLSQQERSTS LFLDSGSCNN TLHPNLEYRR SNRFGYGVKE EVDEHAFFSE  240
PSGSVRGGFS GSSSSLDHNH HESNWQLTMS CSNSSSKQRT CSALQTEHYP HLQLQNFTDS  300
KMERREETQR TIHHFFDEGP LKDRDSSWLD LDDNNKSSNS GSVSTTRLSI SIPNSAHDFP  360
IFNSRNHHED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	9e-57	GRF family protein