PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G02916
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 963aa    MW: 106365 Da    PI: 5.8923
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G02916genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.8e-06574593626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  Cr++++ G C+ Gd+CkF+H+
  Ro01_G02916 574 CRHYLA-GRCHEGDKCKFSHD 593
                  ******.*************7 PP

2zf-CCCH22.42.1e-07627647525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +C++f ++G C +GdrC F+H
  Ro01_G02916 627 PCDNFVANGSCIRGDRCLFSH 647
                  7******************** PP

Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    
MEEPQIETGK PSETLISFPP HRRRILKSET HRSLVRILSH CYDESHHSIA FSAQNVPHEP  60
NQDNGSNGLG EATEKEACGN VELVNPSSMN SDDSEAQQVM VVDESRDTNG LQEKIEQIKE  120
IFRVEENEDF PELMEGMDFE NTFGIDFQDL EFGPEEMLMD ELEQIVKGNY ENTPKPSTTS  180
LAPPNEGVNG KVELLNNLEE HDDTHNSVTV RPENVVQKVS DTFDSSINNV VIGEIQNERE  240
SNEHSSSKIN TLDVEPIIQR KAMETSVFSG GAEDSFTPIT EVEEFEVPEH ISQKVPEVHG  300
RSLDKDMVTD ASKPSESKDK SLSQKANVLE VEHEMQLKDN ELEMVRPRNE VNSPNHMNDG  360
DMEEGEISDD DGMHERSTDM LLHDTVRSEE NKVNEVQIFK NVIDQKEHTG KEAIGNEFDS  420
NFFLMSIADK VQNPRGVELR ERTTKPIGIL GVVQGKTREA IKADDYDPLL ESRRIEEKDS  480
EIGRGIGIQE ACTNNQAWHE KISEDNEAGS CGTTSEDKGD AGVSIKRKRG PPSKEKKQRK  540
KARERMKRAE NNRKLGVKRL KLHSIEKPKT VIYCRHYLAG RCHEGDKCKF SHDTVPLTKS  600
KPCCYFSRQS CMKGDDCPFD HQLFKYPCDN FVANGSCIRG DRCLFSHKIP SKEDGATAAS  660
KPELVPPSVR GSSRPAQVKI GSPSQKNAHA LPHPTGTHSH NNTELIMART LLEQPTMATK  720
GFSFLSTGKP LLIHSSKSTQ GVLAPDRNTG VKAGNLMQQS PSSSVPNSKE NLATTPPVVT  780
PKGINFLSFG KASPDGSSGK NQGRHQTNAS VSETLQNLNG MLKVKQPAQP KAADFLSFGK  840
APLANSSTGN PFSLPSSSDN ANDRRFSESQ GTADKPQSSS AISLRPSPLT SGQSSDHTAS  900
RFTVNQRSLF STLAFAAKYE MRKTNQSIGS AATQVDRVTK QNDSGKAFKI LDFLSGIGST  960
TKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1539561RKKARERMKRAENNRKLGVKRLK