PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G02916

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 963aa MW: 106365 Da PI: 5.8923

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G02916	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.6	6.8e-06	574	593	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ Gd+CkF+H+ Ro01_G02916 574 CRHYLA-GRCHEGDKCKFSHD 593 ****.***********7 PP
2	zf-CCCH	22.4	2.1e-07	627	647	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f ++G C +GdrC F+H Ro01_G02916 627 PCDNFVANGSCIRGDRCLFSH 647 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence
MEEPQIETGK PSETLISFPP HRRRILKSET HRSLVRILSH CYDESHHSIA FSAQNVPHEP 60 NQDNGSNGLG EATEKEACGN VELVNPSSMN SDDSEAQQVM VVDESRDTNG LQEKIEQIKE 120 IFRVEENEDF PELMEGMDFE NTFGIDFQDL EFGPEEMLMD ELEQIVKGNY ENTPKPSTTS 180 LAPPNEGVNG KVELLNNLEE HDDTHNSVTV RPENVVQKVS DTFDSSINNV VIGEIQNERE 240 SNEHSSSKIN TLDVEPIIQR KAMETSVFSG GAEDSFTPIT EVEEFEVPEH ISQKVPEVHG 300 RSLDKDMVTD ASKPSESKDK SLSQKANVLE VEHEMQLKDN ELEMVRPRNE VNSPNHMNDG 360 DMEEGEISDD DGMHERSTDM LLHDTVRSEE NKVNEVQIFK NVIDQKEHTG KEAIGNEFDS 420 NFFLMSIADK VQNPRGVELR ERTTKPIGIL GVVQGKTREA IKADDYDPLL ESRRIEEKDS 480 EIGRGIGIQE ACTNNQAWHE KISEDNEAGS CGTTSEDKGD AGVSIKRKRG PPSKEKKQRK 540 KARERMKRAE NNRKLGVKRL KLHSIEKPKT VIYCRHYLAG RCHEGDKCKF SHDTVPLTKS 600 KPCCYFSRQS CMKGDDCPFD HQLFKYPCDN FVANGSCIRG DRCLFSHKIP SKEDGATAAS 660 KPELVPPSVR GSSRPAQVKI GSPSQKNAHA LPHPTGTHSH NNTELIMART LLEQPTMATK 720 GFSFLSTGKP LLIHSSKSTQ GVLAPDRNTG VKAGNLMQQS PSSSVPNSKE NLATTPPVVT 780 PKGINFLSFG KASPDGSSGK NQGRHQTNAS VSETLQNLNG MLKVKQPAQP KAADFLSFGK 840 APLANSSTGN PFSLPSSSDN ANDRRFSESQ GTADKPQSSS AISLRPSPLT SGQSSDHTAS 900 RFTVNQRSLF STLAFAAKYE MRKTNQSIGS AATQVDRVTK QNDSGKAFKI LDFLSGIGST 960 TKQ

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence

MEEPQIETGK PSETLISFPP HRRRILKSET HRSLVRILSH CYDESHHSIA FSAQNVPHEP  60
NQDNGSNGLG EATEKEACGN VELVNPSSMN SDDSEAQQVM VVDESRDTNG LQEKIEQIKE  120
IFRVEENEDF PELMEGMDFE NTFGIDFQDL EFGPEEMLMD ELEQIVKGNY ENTPKPSTTS  180
LAPPNEGVNG KVELLNNLEE HDDTHNSVTV RPENVVQKVS DTFDSSINNV VIGEIQNERE  240
SNEHSSSKIN TLDVEPIIQR KAMETSVFSG GAEDSFTPIT EVEEFEVPEH ISQKVPEVHG  300
RSLDKDMVTD ASKPSESKDK SLSQKANVLE VEHEMQLKDN ELEMVRPRNE VNSPNHMNDG  360
DMEEGEISDD DGMHERSTDM LLHDTVRSEE NKVNEVQIFK NVIDQKEHTG KEAIGNEFDS  420
NFFLMSIADK VQNPRGVELR ERTTKPIGIL GVVQGKTREA IKADDYDPLL ESRRIEEKDS  480
EIGRGIGIQE ACTNNQAWHE KISEDNEAGS CGTTSEDKGD AGVSIKRKRG PPSKEKKQRK  540
KARERMKRAE NNRKLGVKRL KLHSIEKPKT VIYCRHYLAG RCHEGDKCKF SHDTVPLTKS  600
KPCCYFSRQS CMKGDDCPFD HQLFKYPCDN FVANGSCIRG DRCLFSHKIP SKEDGATAAS  660
KPELVPPSVR GSSRPAQVKI GSPSQKNAHA LPHPTGTHSH NNTELIMART LLEQPTMATK  720
GFSFLSTGKP LLIHSSKSTQ GVLAPDRNTG VKAGNLMQQS PSSSVPNSKE NLATTPPVVT  780
PKGINFLSFG KASPDGSSGK NQGRHQTNAS VSETLQNLNG MLKVKQPAQP KAADFLSFGK  840
APLANSSTGN PFSLPSSSDN ANDRRFSESQ GTADKPQSSS AISLRPSPLT SGQSSDHTAS  900
RFTVNQRSLF STLAFAAKYE MRKTNQSIGS AATQVDRVTK QNDSGKAFKI LDFLSGIGST  960
TKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	539	561	RKKARERMKRAENNRKLGVKRLK