PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G02901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 22510.2 Da PI: 4.9728 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124 | 7.4e-39 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCa+Ck++r+kC ++C lapyfpa++ ++f+n+hklFG+sn+lk+++ +++++r++a++++++e++ar +dPv+G++gvi++l q++ ++++l++++ Ro01_G02901 12 ACASCKHQRKKCDPNCELAPYFPASKYQEFQNAHKLFGVSNILKIMAMIEPHQRQAAAETILMEGNARKSDPVHGCFGVIKDLMVQISFHEKQLSVAN 109 7**********************************************************************************************999 PP DUF260 99 ee 100 ++ Ro01_G02901 110 QH 111 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MDSESSSPAN QACASCKHQR KKCDPNCELA PYFPASKYQE FQNAHKLFGV SNILKIMAMI 60 EPHQRQAAAE TILMEGNARK SDPVHGCFGV IKDLMVQISF HEKQLSVANQ HLAIHKEQQK 120 KKQEQDQSDY LNVFPDLPNE LMEDLKFFEH EYNYWSTLEG ADNEKPFDME LMEAFDEHGN 180 PLTCFNGQAG ESRYEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-36 | LBD family protein |