PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G02897
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 631aa    MW: 69721.5 Da    PI: 6.3532
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G02897genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-06345362926
                  GGGTS--TTTTT-SS-SS CS
      zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                  f  +G C++G++C+F H+
  Ro01_G02897 345 FVSSGSCPRGETCNFQHD 362
                  5557*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    
LPEEETLNQN DLLSPPGLLQ PPNPASLSFS LSMAPPKILL CGDVLGNLKQ LFKRVVSVNK  60
SAGPFDALFC AGQFFPDSAD QLEEFTDYIE GRAEIPLPTY FIGDYGVGAT KFLLAATKDP  120
GNQGFKMDGL KMCNNLYWLK GSGKFTCHGL SVVYLSGMQS SDGQQFGTYS QDDVDALRAI  180
AEDPGIVDLG VTNKAATSDI PPGASEPFGT DSTVAELVAE IKPRYHIAGT KGVFYAREPY  240
SNIDAVHVTR FIGLAPVGNK DKQKFLHALS PTPASTMSAI EIKTKSPNTT LCPYTYVEGT  300
ANAKEGAKRS SDSVSDSDSQ YWRYDVSQKR QKHGAGDGNK LCFKFVSSGS CPRGETCNFQ  360
HDMDAREQSL RGVCFDFMNK GKCERGTDCK FKHNLQEEGE SYSHKRRGTG NATRSTECWF  420
CLSSSKIESH LFISLGEHYY CALAKGPLVE DHVLLIPIGH SPNTLSLPSE CEIELGKFQD  480
SLKKFYKKQE KEVVFFEWAS KRSSHANLQV VPIPSVKAAS VQNIFHLAAD RLGFKFTTTK  540
FGNSSDGRKS LRTQFDSNFS FFYAELPDGT VLSHLIEESE KFLPQFGREV MAGLLNKADR  600
ADWRNCTDSK EEETKMVEKF KSGFEEFDPN N