PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G02897

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 631aa MW: 69721.5 Da PI: 6.3532

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G02897	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3e-06	345	362	9	26
GGGTS--TTTTT-SS-SS CS zf-CCCH 9 fartGtCkyGdrCkFaHg 26 f +G C++G++C+F H+ Ro01_G02897 345 FVSSGSCPRGETCNFQHD 362 5557*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
LPEEETLNQN DLLSPPGLLQ PPNPASLSFS LSMAPPKILL CGDVLGNLKQ LFKRVVSVNK 60 SAGPFDALFC AGQFFPDSAD QLEEFTDYIE GRAEIPLPTY FIGDYGVGAT KFLLAATKDP 120 GNQGFKMDGL KMCNNLYWLK GSGKFTCHGL SVVYLSGMQS SDGQQFGTYS QDDVDALRAI 180 AEDPGIVDLG VTNKAATSDI PPGASEPFGT DSTVAELVAE IKPRYHIAGT KGVFYAREPY 240 SNIDAVHVTR FIGLAPVGNK DKQKFLHALS PTPASTMSAI EIKTKSPNTT LCPYTYVEGT 300 ANAKEGAKRS SDSVSDSDSQ YWRYDVSQKR QKHGAGDGNK LCFKFVSSGS CPRGETCNFQ 360 HDMDAREQSL RGVCFDFMNK GKCERGTDCK FKHNLQEEGE SYSHKRRGTG NATRSTECWF 420 CLSSSKIESH LFISLGEHYY CALAKGPLVE DHVLLIPIGH SPNTLSLPSE CEIELGKFQD 480 SLKKFYKKQE KEVVFFEWAS KRSSHANLQV VPIPSVKAAS VQNIFHLAAD RLGFKFTTTK 540 FGNSSDGRKS LRTQFDSNFS FFYAELPDGT VLSHLIEESE KFLPQFGREV MAGLLNKADR 600 ADWRNCTDSK EEETKMVEKF KSGFEEFDPN N

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

LPEEETLNQN DLLSPPGLLQ PPNPASLSFS LSMAPPKILL CGDVLGNLKQ LFKRVVSVNK  60
SAGPFDALFC AGQFFPDSAD QLEEFTDYIE GRAEIPLPTY FIGDYGVGAT KFLLAATKDP  120
GNQGFKMDGL KMCNNLYWLK GSGKFTCHGL SVVYLSGMQS SDGQQFGTYS QDDVDALRAI  180
AEDPGIVDLG VTNKAATSDI PPGASEPFGT DSTVAELVAE IKPRYHIAGT KGVFYAREPY  240
SNIDAVHVTR FIGLAPVGNK DKQKFLHALS PTPASTMSAI EIKTKSPNTT LCPYTYVEGT  300
ANAKEGAKRS SDSVSDSDSQ YWRYDVSQKR QKHGAGDGNK LCFKFVSSGS CPRGETCNFQ  360
HDMDAREQSL RGVCFDFMNK GKCERGTDCK FKHNLQEEGE SYSHKRRGTG NATRSTECWF  420
CLSSSKIESH LFISLGEHYY CALAKGPLVE DHVLLIPIGH SPNTLSLPSE CEIELGKFQD  480
SLKKFYKKQE KEVVFFEWAS KRSSHANLQV VPIPSVKAAS VQNIFHLAAD RLGFKFTTTK  540
FGNSSDGRKS LRTQFDSNFS FFYAELPDGT VLSHLIEESE KFLPQFGREV MAGLLNKADR  600
ADWRNCTDSK EEETKMVEKF KSGFEEFDPN N