PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G01326

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 450aa MW: 50634.6 Da PI: 6.7965

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G01326	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.4	3.9e-31	90	184	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s s++s+r+g i++r fvC keg+r ++++k + + +r+raetr+gCka+l+vk +++g w+v+++++eHnHel+p Ro01_G01326 90 FYNSYARRIGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRMDKHDKlgpdhDGRIKRPRAETRVGCKAMLVVKIQDSGGWVVSSFVKEHNHELVP 184 9****************************************99999999999*************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MLLNLSNMSK ICPFGKMEFE PLSLGNEVVE FDMMGLGDID HSVDDINIFD DSPAVVGSAV 60 IAQPYILEGE TNLEPYEGME FESEEAAKAF YNSYARRIGF STRVSMSRRS RRDGAIIQRS 120 FVCAKEGFRM DKHDKLGPDH DGRIKRPRAE TRVGCKAMLV VKIQDSGGWV VSSFVKEHNH 180 ELVPPNKVHC LRSHRHVSGS AKTLIDTLQG AGIGPSGIMS ALIKEYGAIS NVGFTEQELV 240 ETLTFLATKV EDEEAGSIYQ ALKYVDEGVK TAEIYNVAIG ALQEAADKVA LENKNAGRLF 300 IVNRTGREDG LHWGCQDDQD KKIQKLSRQI ERARRKCEVY RTHLFSVLKD IEEQKLQLSV 360 KVQNIRIEMK EDYKQMNYPL IRLQMNLPSF HTGKYLVHAL IFPTSAIYSI HSKLMHVEDE 420 LQGNKNTEQQ TNLKTVQNHT ANISETGKPN

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MLLNLSNMSK ICPFGKMEFE PLSLGNEVVE FDMMGLGDID HSVDDINIFD DSPAVVGSAV  60
IAQPYILEGE TNLEPYEGME FESEEAAKAF YNSYARRIGF STRVSMSRRS RRDGAIIQRS  120
FVCAKEGFRM DKHDKLGPDH DGRIKRPRAE TRVGCKAMLV VKIQDSGGWV VSSFVKEHNH  180
ELVPPNKVHC LRSHRHVSGS AKTLIDTLQG AGIGPSGIMS ALIKEYGAIS NVGFTEQELV  240
ETLTFLATKV EDEEAGSIYQ ALKYVDEGVK TAEIYNVAIG ALQEAADKVA LENKNAGRLF  300
IVNRTGREDG LHWGCQDDQD KKIQKLSRQI ERARRKCEVY RTHLFSVLKD IEEQKLQLSV  360
KVQNIRIEMK EDYKQMNYPL IRLQMNLPSF HTGKYLVHAL IFPTSAIYSI HSKLMHVEDE  420
LQGNKNTEQQ TNLKTVQNHT ANISETGKPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-75	FAR1 family protein