PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G01288
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Nin-like
Protein Properties Length: 329aa    MW: 38164.1 Da    PI: 9.3003
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G01288genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.39.5e-26202251352
       RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ++i+l dl kyF+ pi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl
  Ro01_G01288 202 AKITLPDLVKYFDIPIVEASRSLNVGLTVLKKKCREFGIPRWPHRKIKSL 251
                  78**********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MDSCDPHFLR SLLVFKNTIN QELIRSLHVY GLEDGKENKV EREFLFSANG YVELRAYPVL  60
RLMKFRVSQV LEGYVNGCWV CILAFHANRS PNFTCIPCIL SVSRNPQLML IPTLANDLQM  120
VIEMTCIKDE KEPLQKSHEE TCQGNDDNHH QLRRSLPMLD LDLNRPPCPV TMTESSDDQE  180
IGRQSPGFIE KKNRRAASDR IAKITLPDLV KYFDIPIVEA SRSLNVGLTV LKKKCREFGI  240
PRWPHRKIKS LDSLIRDLQE ETEFQQKENK AAALAVAKRQ RMLESEKESI ERRPFLDMKT  300
ETKRFRQDVF KRRHRARVLR SQGLSLSGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.13e-85Nin-like family protein